Detail information of GWHGAAEX006501/evm.TU.scaffold_185.36


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|11499558|ref|NP_070800.1|7.00E-122proteasome-activating nucleotidase [Archaeoglobus fulgidus DSM 4304]
KOGKOG0727026S proteasome regulatory complex, ATPase RPT3
nrgi|672166169|ref|XP_008803008.1|0PREDICTED: 26S protease regulatory subunit 6B homolog [Phoenix dactylifera]
Swissprottr|Q9SEI4|PRS6B_ARATH026S protease regulatory subunit 6B homolog
trEMBLtr|A0A067JP57|A0A067JP57_JATCU0Uncharacterized protein {ECO:0000313|EMBL:KDP25672.1}
TAIRAT5G582900regulatory particle triple-A ATPase 3

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000018914477601472892+
Transcript Sequence

Network for GWHGAAEX006501

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00004.28AAA2013344.90E-44
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K03063PSMC4, RPT3 Proteasome map03050

Gene Ontology

GO term OntologyName
GO:0030163Biological Processprotein catabolic process
GO:0016787Molecular Functionhydrolase activity
GO:0005524Molecular FunctionATP binding
GO:0005737Cellular Componentcytoplasm

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms60.530
SRR2545915Juvenile tuber69.090
SRP108465SRR5643513five period of Gastrodia elata103.940
SRR5643514five period of Gastrodia elata143.550
SRR5643515five period of Gastrodia elata118.100
SRR5643524five period of Gastrodia elata149.190
SRR5643525five period of Gastrodia elata117.890
SRR5643528five period of Gastrodia elata137.000
SRR5643658five period of Gastrodia elata118.060
SRR5643659five period of Gastrodia elata95.950
SRR5643660five period of Gastrodia elata100.740
SRR5643661five period of Gastrodia elata107.210
SRR5643662five period of Gastrodia elata92.290
SRR5643663five period of Gastrodia elata87.190
SRR5643664five period of Gastrodia elata85.050
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_193.580
SRR6049655Rhizomagastrodiae_C368-T10_good_1153.390
SRR6049656Rhizomagastrodiae_C368-T07_good_1117.090
SRR6049657Rhizomagastrodiae_C368-T07_good_183.690
SRR6049658Rhizomagastrodiae_C368-T04_good_182.100
SRR6049659Rhizomagastrodiae_C368-T04_good_179.230
SRR6049660Rhizomagastrodiae_C368-T01_good_182.610
SRR6049661Rhizomagastrodiae_C368-T04_good_182.420
SRR6049662Rhizomagastrodiae_C368-T01_good_1134.660
SRR6049663Rhizomagastrodiae_C368-T01_good_1110.710
SRR6049664Rhizomagastrodiae_C368-T10_good_1159.210
SRR6049665Rhizomagastrodiae_C368-T10_good_1159.210
SRP279888GastroGastrodia elata tuber 81.61
JuvenJuvenile tuber110.76
Mother_GastroMother tuber of Gastrodia elata 85.02
Mother_JuvenMother tuber of Juvenile 108.77