Gene detail

Detail information of GWHGAAEX006505/evm.TU.scaffold_185.40

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG2769	Putative u4/u6 small nuclear ribonucleoprotein
nr	gi\|672140491\|ref\|XP_008794049.1\|	PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp3-like [Phoenix dactylifera]
trEMBL	tr\|D7T479\|D7T479_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI25311.3}
TAIR	AT1G28060	Pre-mRNA-splicing factor 3

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000189	1541719	1555844	-

Transcript Sequence
>GWHTAAEX006505 TAATCCTCGGCCTTCAAAAAGGTCGCAAGGTGCAACTTTCCATCGCTTATCCAAACAAATCTTCAGGGGCGGAGCACTCTAGATCTAAATCATGAGTAGGGCTTCCGAGCGGGACAGGGCCAGTCGTAAGAAGAGAGAAGAACGAGATTGGGAGACGAACGAAGATTCTCATGTTCGCGATTTGGAGGCTGAGAGGGATTGGAAGAAGCATCGTCATCACTACGATGACGACGAACGGAGGCACGAGCGCCACCGAGAATCCGATCGACGGCGCCGATCCGTCGAAGATGCAACTTTAGAGCCTGATCTTCGCCCGCGCAATCGATCTCCCGATCGGCATAGGGATTCAGTTGAGCGTCGCAATCGATCGAGAGGGGATTCTCCCTCCGATGCTGTCGAGCGCGATCGAGACGTGGATCGGCGCCACCGTCGTAGTACAAAGGAGGATTTGGAGAACGGTGGGGTGCACAAGCACGAGAGGTCGTCCAACTTGGTTGGGAAGTTGGTCGAGCGGGAAGGGTTTTCTCACGAAGAATCCGCGGAGAGGCGTCACAGGAAGAGGAAAGATTACAGGGAAAGTGATGAAGAGGAAATCGAGAATAACAACGGCAAGCGCACTAGGGTCTCTGATGTGGAGCACAGGAAATCAACGAAACGGGTTAATGACAGGGATCTGGGGGATGTGAGCGTGCAATCTGCAGATAACAAGGTTGAAAGCAGGAGGGAAAATATTTATAAGGATAGGAGGAAAGAAAGAGCGATTGTTATGGATGAGGAAATGAAGCACATGCAGAAGAAAGAAAAAGCAGCAAATGGGAGTAGCAGACATGATAAGAAGTCACGTGATAATGCTGAGCTTGATGAGAAGCTGGTTGCTGATGAGGAAAATGTAACTCTTAGAAAGGAGCAGAGATTTAAGGATGAGGTTAATGAGGAGAAGATGGAAAGGTCTGTGGTTGCCAAGCCACCTGTTTCATCTAATAATTCTATGGCTGCATCGCAAAAGGTTGAGTTAGCTGATGCTAACTGTGATGGAAGCAGTGTGTTTCCTCCCAGTAGCGGTTCATTAGCCAATACCCTTGCTGAGGAACCGCTCATAGTGGCATCAAAGGTTTCCCAGGCTTCATCCAACTCCCATTCGAGACATACTAAGGTAATTACTGCCATCAATGAAAATGAGGGAGTTAGTATTATCAGATCTGACGAGGTTACTGGAAAATCTAGTACAGATGGAACAACAACATCCTCAGTTGCTGGCAAAAGTGGCAGCTTATCTCGTGACGCTTTAGCAAAAGCTAAGAAAGCCTTGCAAATGAAGAAGGAATTGTCGGAGAAACTGAAGAAGATCCCTGTGCTAAATAAACAACAGCCAAGTGCAGGTACTCATGATAGTTCACACAGAGAATCAAAGTATACTTCTAATTCAGCAGCAAGCGGCCCCATTGCTTCTTCTATTTCCTTGGCTCCTTTCTCTTCAATGCCCGAGAATGCGTCAGCTGCAGGAGGTGTAAAGGGTGTTCTATCTGTTTCTGCAGCCAGTTACGAGGCAGTGAAGCGTGCCCAGGAGTTCGCCAAAATATGGCATCATCAGGATCCTGATTTCACGCCTCTCATGAATATGTTTCCGGGGTCATCTGCAACTGATATTGGAACGCTTCCAAAATCTACCAAAGTTCCTGTTCTTCGATTAGATGCCCAGGGAAGAGAAATCGATGAACATGGCAATGTTGTTAATAAGCCCAAGGTGACAAATCTCAGCACCCTGAAGGTCAATATAAATAAGCAGAAGAAAGAGGCTTTTCAGATACTCAGGCCAGAGCTTGATACTGATACGGAGAGCACGTTCTTTGATGCCAGAATGGGCGTCAATAAAACGAAGCTGATGAGGCCTAAAAGGTCATCATTCCAGTTTGTGGAAGAGGGGAAATGGTCGAAGCAGGCAGAGGTCATGAAAATCAAGAATCAATTTGGAGAAGCCCAAGCCAAAGAATTGAAGGCCAAGCAGTCACAGCTTTTGAAAGCCAAGGCTGAACCCGACGATAATCCAAACTTAATTGCAGTGGGAGAGAGAACGTTTAAAGAGAAAAAGAAGGATGAAGTTCCAGAAATAGAGTGGTGGGACAAACCATTCTTACCCTCAGGCGGTACCTATAACGATATTGCTGAAGAGAATTTGAATCTAGAAAAGATAACCATATACGTGGAGCACCCTCGGCCAATCGAACCGCCGGCAGAGCCTGCTCCACCCCCTCCCCAGCCTCTCAAGCTGACGAAAAAGGAACAGAAGAAGCTCAGGACGCAGCGGCGCCTTGCCAAAGAGAGAGATAGGCAGGAGATGATACGCCAGGGTCTAATTGAGCCTCCCAAACCCAAGATCAAGATGAGCAACCTCATGAAAGTCCTTTCCTCCGAGGCCACCCAGGATCCCACCAGGCTCGAAAAGGAAGTCCGAGCCGCCGCGCTTGAGCGCGAGCAGGCCCACATGGACAGAAACATTGCTCGCAAGCTCACCCCGCAGGAGCGCCGCGAGAAGAAAGAGAGGAAGCTCTTTGATGACCCGTCCGTTCCCGAGACACTGGTCTCTGTGTACAGAATTAATGACCTCTCGCATCCTCAGACCCGTTTTAAGGTCGACGTGAACGCGCAGGAGAACCGCCTCACCGGATGCGCCGTGATGTCCGACGGTCTGAGCGTCGTGGTCGTTGAAGGTGTTCGCAAGTCTATTAAGAGGTACAGCAAGCTGATGCTTAAACGCATCAACTGGGCGGCTGCCGTCGGGGACGACGGTGATGGCGGGGATAATAACAATAACGTAGACGAAACCAGGGAGGCCTCTTGCCCCAACAAGTGCGTGCTTGTGTGGCAGGGCAGTGCCGCCAAACCAAGCTTCAACAGGTTCTTTGTCCACCTGTGCAGAAGCGATGCCGCCGCCAGGAAAGTGCTTGCCGATGCCGGCGTTCCTCACTATTGGGATTTGGCCGTCAACTTCTCGGACGAGTTATTGTGGAACTAAGGGAAGTATGATTCTCCTTTGCCTGCCTGCTGATCTTTTGGCTTTAGATTTGCTCATTTCTTTCTGTCTTGGTATAAAGATTGAAGACATGTTCGTTGGCTATCATCAGCCTGCAGGGTGTGTGCTGTTCAGCTCACCTCCACCCCGCCCCAGTTTTTAAAACTTTTCTTTATTTTTCCTTTCAGCTGAACTTTTAGTTTAAATGATATATAGAGAACCTGGATTATTATTATTAGTATGAAAAATCTCTTCTCTATTTTTAGGAGATATTTGAACAAACGGTTGGTATTATATGCATTTTTAATCTTTGAATTTGACGTGTGGCACTTTTTATATGAACGAACTTATCAGCCCAATTTTTATTCCCCTCTATTTACACCAAATATATAGTGTG

Network for GWHGAAEX006505

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08572.9	PRP3	584	807	4.50E-62
PF06544.11	DUF1115	832	963	4.10E-41

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12843	PRPF3, PRP3	Spliceosome	map03040

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	22.640
SRP064423	SRR2545915	Juvenile tuber	16.760
SRP108465	SRR5643513	five period of Gastrodia elata	25.170
	SRR5643514	five period of Gastrodia elata	23.310
	SRR5643515	five period of Gastrodia elata	25.180
	SRR5643524	five period of Gastrodia elata	24.170
	SRR5643525	five period of Gastrodia elata	30.580
	SRR5643528	five period of Gastrodia elata	23.100
	SRR5643658	five period of Gastrodia elata	24.660
	SRR5643659	five period of Gastrodia elata	25.690
	SRR5643660	five period of Gastrodia elata	27.860
	SRR5643661	five period of Gastrodia elata	25.460
	SRR5643662	five period of Gastrodia elata	32.380
	SRR5643663	five period of Gastrodia elata	28.360
	SRR5643664	five period of Gastrodia elata	26.760
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	25.550
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	25.210
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	21.180
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	26.550
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	24.500
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	27.540
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	23.080
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	24.100
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	20.190
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	21.400
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	21.470
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	21.470
SRP279888	Gastro	Gastrodia elata tuber	27.36
	Juven	Juvenile tuber	24.33
	Mother_Gastro	Mother tuber of Gastrodia elata	29.13
	Mother_Juven	Mother tuber of Juvenile	33.16