Detail information of GWHGAAEX006506/evm.TU.scaffold_185.42
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG1041 | 0 | Translation initiation factor 2C (eIF-2C) and related proteins |
| nr | gi|326497697|dbj|BAK05938.1| | 0 | predicted protein [Hordeum vulgare subsp. vulgare] |
| Swissprot | tr|Q851R2|MEL1_ORYSJ | 0 | Protein argonaute MEL1 |
| trEMBL | tr|F2EF16|F2EF16_HORVD | 0 | Protein argonaute {ECO:0000256|RuleBase:RU361178} |
| TAIR | AT1G48410 | 0 | Stabilizer of iron transporter SufD / Polynucleotidyl transferase |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000189 | 1590019 | 1602290 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX006506
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module2 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF16486.4 | ArgoN | 114 | 242 | 7.50E-26 |
| PF08699.9 | ArgoL1 | 253 | 300 | 1.70E-20 |
| PF02170.21 | PAZ | 315 | 431 | 1.30E-25 |
| PF16488.4 | ArgoL2 | 441 | 487 | 3.40E-15 |
| PF16487.4 | ArgoMid | 497 | 575 | 1.30E-11 |
| PF02171.16 | Piwi | 594 | 912 | 3.00E-102 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K11593 | ELF2C, AGO | Axon regeneration | map04361 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
| GO:0003676 | Molecular Function | nucleic acid binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 8.720 |
| SRR2545915 | Juvenile tuber | 7.420 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 8.740 |
| SRR5643514 | five period of Gastrodia elata | 9.520 | |
| SRR5643515 | five period of Gastrodia elata | 11.230 | |
| SRR5643524 | five period of Gastrodia elata | 9.850 | |
| SRR5643525 | five period of Gastrodia elata | 69.870 | |
| SRR5643528 | five period of Gastrodia elata | 27.090 | |
| SRR5643658 | five period of Gastrodia elata | 33.680 | |
| SRR5643659 | five period of Gastrodia elata | 12.310 | |
| SRR5643660 | five period of Gastrodia elata | 13.800 | |
| SRR5643661 | five period of Gastrodia elata | 12.610 | |
| SRR5643662 | five period of Gastrodia elata | 21.960 | |
| SRR5643663 | five period of Gastrodia elata | 24.280 | |
| SRR5643664 | five period of Gastrodia elata | 30.530 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 8.280 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 9.840 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 8.050 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 7.880 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 7.330 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 6.050 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 5.430 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 4.830 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 9.130 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 5.910 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 8.300 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 8.300 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 39.82 |
| Juven | Juvenile tuber | 15.17 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 28.40 | |
| Mother_Juven | Mother tuber of Juvenile | 36.25 |