Detail information of GWHGAAEX006507/evm.TU.scaffold_185.45
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|146328793|ref|YP_001209360.1| | 7.00E-14 | RNA recognition motif-containing protein [Dichelobacter nodosus VCS1703A] |
| KOG | KOG0123 | 4.00E-173 | Polyadenylate-binding protein (RRM superfamily) |
| nr | gi|743759689|ref|XP_010933305.1| | 0 | PREDICTED: polyadenylate-binding protein 7-like [Elaeis guineensis] |
| Swissprot | tr|Q9ZQA8|PABP7_ARATH | 1.00E-173 | Polyadenylate-binding protein 7 |
| trEMBL | tr|D7TIX4|D7TIX4_VITVI | 0 | Putative uncharacterized protein {ECO:0000313|EMBL:CBI30200.3} |
| TAIR | AT2G36660 | 4.00E-173 | poly(A) binding protein 7 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000189 | 1670866 | 1675537 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX006507
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00076.21 | RRM_1 | 26 | 96 | 1.20E-17 |
| PF00076.21 | RRM_1 | 114 | 181 | 4.60E-20 |
| PF00076.21 | RRM_1 | 204 | 272 | 2.20E-22 |
| PF00076.21 | RRM_1 | 307 | 375 | 3.90E-18 |
| PF00658.17 | PABP | 539 | 631 | 6.30E-24 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K13126 | PABPC | RNA transport | map03013 |
| mRNA surveillance pathway | map03015 | ||
| RNA degradation | map03018 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0003723 | Molecular Function | RNA binding |
| GO:0003676 | Molecular Function | nucleic acid binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.060 |
| SRR2545915 | Juvenile tuber | 0.110 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 0.030 |
| SRR5643514 | five period of Gastrodia elata | 0.000 | |
| SRR5643515 | five period of Gastrodia elata | 0.030 | |
| SRR5643524 | five period of Gastrodia elata | 0.000 | |
| SRR5643525 | five period of Gastrodia elata | 0.000 | |
| SRR5643528 | five period of Gastrodia elata | 0.130 | |
| SRR5643658 | five period of Gastrodia elata | 0.000 | |
| SRR5643659 | five period of Gastrodia elata | 0.000 | |
| SRR5643660 | five period of Gastrodia elata | 0.000 | |
| SRR5643661 | five period of Gastrodia elata | 0.000 | |
| SRR5643662 | five period of Gastrodia elata | 0.000 | |
| SRR5643663 | five period of Gastrodia elata | 0.000 | |
| SRR5643664 | five period of Gastrodia elata | 0.000 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 0.140 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 0.420 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 0.090 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 0.150 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 0.000 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 0.000 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 0.090 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 0.060 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 0.020 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 0.000 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 0.120 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 0.120 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 0.01 |
| Juven | Juvenile tuber | 0.00 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.03 | |
| Mother_Juven | Mother tuber of Juvenile | 0.04 |