Detail information of GWHGAAEX006510/evm.TU.scaffold_186.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|387789571|ref|YP_006254636.1|0isocitrate dehydrogenase [Solitalea canadensis DSM 3403]
KOGKOG15260NADP-dependent isocitrate dehydrogenase
nrgi|641827359|gb|KDO46544.1|0hypothetical protein CISIN_1g015012mg [Citrus sinensis]
Swissprottr|P50218|IDHC_TOBAC0Isocitrate dehydrogenase [NADP]
trEMBLtr|A0A067DU62|A0A067DU62_CITSI0Isocitrate dehydrogenase [NADP] {ECO:0000256|PIRNR:PIRNR000108}
TAIRAT1G659300cytosolic NADP+-dependent isocitrate dehydrogenase

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX000001932965452933+
Transcript Sequence

Network for GWHGAAEX006510

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00180.19Iso_dh74006.20E-88
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K00031IDH1, IDH2, icd Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Microbial metabolism in diverse environmentsmap01120
Biosynthesis of antibioticsmap01130
Carbon metabolismmap01200
2-Oxocarboxylic acid metabolismmap01210
Biosynthesis of amino acidsmap01230
Citrate cycle (TCA cycle)map00020
Carbon fixation pathways in prokaryotesmap00720
Glutathione metabolismmap00480
Peroxisomemap04146

Gene Ontology

GO term OntologyName
GO:0006102Biological Processisocitrate metabolic process
GO:0055114Biological Processoxidation-reduction process
GO:0051287Molecular FunctionNAD binding
GO:0004450Molecular Functionisocitrate dehydrogenase (NADP+) activity
GO:0016616Molecular Functionoxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
GO:0000287Molecular Functionmagnesium ion binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms48.910
SRR2545915Juvenile tuber29.860
SRP108465SRR5643513five period of Gastrodia elata26.340
SRR5643514five period of Gastrodia elata23.690
SRR5643515five period of Gastrodia elata29.950
SRR5643524five period of Gastrodia elata27.700
SRR5643525five period of Gastrodia elata16.070
SRR5643528five period of Gastrodia elata40.300
SRR5643658five period of Gastrodia elata16.230
SRR5643659five period of Gastrodia elata23.790
SRR5643660five period of Gastrodia elata24.950
SRR5643661five period of Gastrodia elata29.510
SRR5643662five period of Gastrodia elata24.470
SRR5643663five period of Gastrodia elata32.700
SRR5643664five period of Gastrodia elata18.380
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_116.820
SRR6049655Rhizomagastrodiae_C368-T10_good_119.710
SRR6049656Rhizomagastrodiae_C368-T07_good_116.210
SRR6049657Rhizomagastrodiae_C368-T07_good_116.870
SRR6049658Rhizomagastrodiae_C368-T04_good_111.590
SRR6049659Rhizomagastrodiae_C368-T04_good_110.670
SRR6049660Rhizomagastrodiae_C368-T01_good_114.080
SRR6049661Rhizomagastrodiae_C368-T04_good_114.550
SRR6049662Rhizomagastrodiae_C368-T01_good_121.560
SRR6049663Rhizomagastrodiae_C368-T01_good_114.840
SRR6049664Rhizomagastrodiae_C368-T10_good_127.260
SRR6049665Rhizomagastrodiae_C368-T10_good_127.260
SRP279888GastroGastrodia elata tuber 28.71
JuvenJuvenile tuber16.64
Mother_GastroMother tuber of Gastrodia elata 30.46
Mother_JuvenMother tuber of Juvenile 29.02