Detail information of GWHGAAEX006512/evm.TU.scaffold_186.3


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG28873.00E-49Membrane protein involved in ER to Golgi transport
nrgi|743800028|ref|XP_010925720.1|6.75E-72PREDICTED: vesicle transport protein SFT2B [Elaeis guineensis]
trEMBLtr|M0RKA6|M0RKA6_MUSAM8.00E-70Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr10P21810_001}
TAIRAT5G235503.00E-49Got1/Sft2-like vescicle transport protein family

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX000001936488477855+
Transcript Sequence

Network for GWHGAAEX006512

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF04178.11Got1501553.00E-30
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0016192Biological Processvesicle-mediated transport

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms13.470
SRR2545915Juvenile tuber18.980
SRP108465SRR5643513five period of Gastrodia elata19.460
SRR5643514five period of Gastrodia elata23.570
SRR5643515five period of Gastrodia elata22.750
SRR5643524five period of Gastrodia elata23.200
SRR5643525five period of Gastrodia elata30.170
SRR5643528five period of Gastrodia elata25.500
SRR5643658five period of Gastrodia elata27.510
SRR5643659five period of Gastrodia elata15.300
SRR5643660five period of Gastrodia elata13.780
SRR5643661five period of Gastrodia elata14.970
SRR5643662five period of Gastrodia elata12.170
SRR5643663five period of Gastrodia elata14.250
SRR5643664five period of Gastrodia elata11.750
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_118.680
SRR6049655Rhizomagastrodiae_C368-T10_good_131.090
SRR6049656Rhizomagastrodiae_C368-T07_good_126.440
SRR6049657Rhizomagastrodiae_C368-T07_good_114.250
SRR6049658Rhizomagastrodiae_C368-T04_good_115.080
SRR6049659Rhizomagastrodiae_C368-T04_good_114.200
SRR6049660Rhizomagastrodiae_C368-T01_good_115.740
SRR6049661Rhizomagastrodiae_C368-T04_good_115.730
SRR6049662Rhizomagastrodiae_C368-T01_good_123.340
SRR6049663Rhizomagastrodiae_C368-T01_good_124.250
SRR6049664Rhizomagastrodiae_C368-T10_good_130.740
SRR6049665Rhizomagastrodiae_C368-T10_good_130.740
SRP279888GastroGastrodia elata tuber 13.51
JuvenJuvenile tuber11.37
Mother_GastroMother tuber of Gastrodia elata 10.45
Mother_JuvenMother tuber of Juvenile 10.35