Gene detail

Detail information of GWHGAAEX006520/evm.TU.scaffold_186.11

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|333911635\|ref\|YP_004485368.1\|	1.00E-06	KH domain-containing protein [Methanotorris igneus Kol 5]
KOG	KOG1676	9.00E-119	K-homology type RNA binding proteins
nr	gi\|743756731\|ref\|XP_010918395.1\|	4.08E-177	PREDICTED: far upstream element-binding protein 3-like [Elaeis guineensis]
trEMBL	tr\|M0T493\|M0T493_MUSAM	8.00E-167	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr6P04950_001}
TAIR	AT2G25970	9.00E-119	KH domain-containing protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000193	291321	315473	-

Transcript Sequence
>GWHTAAEX006520 GTCGAGCTCAGCAAAACATCCACATTCCCATTCGTTGGAGCGTCGGCCTTCACGCTCGTTCGCAATTCCGACTCATAACTAGGGTTTCCTAGCATTTGATCTCCAGCTATTGTTCTTCTGATTCCCGCTCATCTCATCATCACCTGTTCTTGCTTTAAAAGAGGGACGGGTTTTTCTTCCTAATGGCGGAAGATCTTCAATATTCCTACAAGCGGAAGTTCGATGATCAGTGTGGCGCCACGTCTCCATCTCCTGATACATCGGCTTCAGGCCGTCGGCCTACCGGATTCTCGGCTCCCATCGTTTCTTCTACCTCGAGCACCACAGCCCCAGTGACCTACAACAACGTTCCGCCACCTCCTGATGGCATCGAGCTTGCAAAGAAGCGTGCTCAGGAGATCGCTGCAAGGATATTCAGCGTCGCCGAAGCTAAGAGGCCTAAGTTAGAAAATGACAGCGGAGGGAACGATTCCAACAGCAAGGGCTTTAGCTCTGACCAATCACTAAAGCCGATGGGCCAGTCTATAGCATTGCATCTTGGTGGGGCTAGTTCAACTTCATCTTCTTATGGCTATTCAGGCTCAATCAAAAAAATTGAGATACCTAATGGAAGGGTTGGAGTCATCATTGGTAAAAGTGGAGAAACAATCAAATATCTCCAGTCACAATCTGGAGCAAGGATTCAAATAACCAGAGATGTAGACGCTGATCCTAATTCACAAAGTAGACCTGTAGACCTTGTCGGTACTCCTGAGCAGATTAGCAAGGCTGAGCAACTAATAAATGATTTGCTTTCTGAGTCTGATGCTGGTGGCTCCAACATTGCTTCTGCTCGAAAATTTTCTGCTGCTCCTACAAATTCTGAGCATTTTTCAATGAAGGTTCCTAACAATAAGGTTGGTGTAATAATTGGCAAAGGAGGTGAGAACATTAGAAGTATGCAGGCCACTTCCGGGGCTCGCATACAGGTGATACCCCTACATCTCCCCCCAGGAAGCACTGCAACAGAGAGAACTGTACATGTAGATGGAACCAAAGAACAGATTGAATTAGCAAAGCAACTGATCAATGATGGTATAAATAGCGAGCACCGTGCTAGAAATTCACAAACTGGAGGATTTCGACCACCCATGCCAGCACCACCAGCAAACTGGGCTTCGCCGGGAACACCGCAGCTGCAGCAAGCTACTTATGGCTACATGCAGCCGGGAGCTTATCCTGGTCCTGTGCCTCAATATAACATGCCTCAGCTGCCTTATGGCGGGTATCCACAACAAGCTTCATCTGCCTGGGCCCAACCGTCGAATCCACCAGCTCAGCAAACTGCCCAAGGTGCCAGTTATGATTATTACAGCCAGCAGCAGCAGTCGTTGCCAGCTGGGAGATCCTCTGTCCCATTGAATAGCAACAATTACAATTATGGCCAGGTTCCTATAGCTTACAATGGGCAAGCTTCGTATACTGAATCTGCATATTCTCAGTCAGCTGCTGGCGATTATAATCAAGCTGGATCTCAGTCAAACTATACTCAGCAAAGCTATAATTCTGCATCTTCTTACAGTAATACCACTCCAACTCAAGAGGGATCTAGTAATCCTAGCTATGCTGTTCAGGGCTCTACTCAACAGGCCCCACCTAGCCAACCACAACCAGTCTCCACTGCTCAGTCTGGATATGCTATGCTTCCTGCATCTCAGTCAGTATATGCAGGGCAAAATCTGCAGCCATCTCAAGCGTATGGTCCTGCTACTCAACATGGATATGGTCAGCCTGCTCAAGTTTACGGGCTTTCTTCTGGGCAGAGCTATTCCCTGCAACCGCCAACAACCCCAGCTGGATATGCTCAGAACTCTCAGCAACTCGCACCTGGGTATGCTTCTGGCAATCCGCAGGCTGGCTATGGAACGCAACAGCAGTCTTATGCTGCGGCTCCGCTGAACCAATCTATATACAGTGATGCATACCCTGGCAGTGCTTATTCGCAGCAGCAGCTTCCACCATATGCTTCTGCTGATGGGACTGTTGCAACGACTTCTACTGAGCTGGCTACCACAGGCGGGGCAACAAAAGCGTCTCCTCAGAATTGATCTTTGGTATTAGAGTAATTTGTTAAAATTGTTCGTCGACTGTTTCAGTTTGGCCATTAAAGTCACAGACTATTCTGCTGTCACTTTATTTCACCAGTTAGTTGATATAGTCAATTCAGTCCCTGAATTATTATCTTAAGGTCGATTTAGTCTTTAAATTTTACTTTCTTGGGACTAAATTTTACTCAAAAAGAATGGTCACGAGACTAAACTGACGATAATAACTGAAATTATCGAGGGACTGTTTTGACAAATTACTAATATTATTATTATTAGGTATATCCGTTGTCATCTAAGCTTTTGACTCTCTTTAGGAGTTCTTAAAGTCTAAACATTTGTTCCATATTTTAGTTTTATCATTAAAACTAGTTTTGTATTATTAAAAGGCTCTCAAACTTGTGGTGCTACGGAGTTCTGTTTTTAATTTTTAATCTGCAAATCCTATACTTTTTAAATATATTTTTTGCGATTTTAATATCAT

Network for GWHGAAEX006520

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00013.28	KH_1	137	202	5.00E-16
PF00013.28	KH_1	231	297	1.00E-18

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003676	Molecular Function	nucleic acid binding
GO:0003723	Molecular Function	RNA binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	64.590
SRP064423	SRR2545915	Juvenile tuber	51.910
SRP108465	SRR5643513	five period of Gastrodia elata	39.640
	SRR5643514	five period of Gastrodia elata	33.910
	SRR5643515	five period of Gastrodia elata	33.410
	SRR5643524	five period of Gastrodia elata	34.430
	SRR5643525	five period of Gastrodia elata	29.220
	SRR5643528	five period of Gastrodia elata	31.200
	SRR5643658	five period of Gastrodia elata	28.760
	SRR5643659	five period of Gastrodia elata	51.050
	SRR5643660	five period of Gastrodia elata	54.150
	SRR5643661	five period of Gastrodia elata	48.330
	SRR5643662	five period of Gastrodia elata	46.860
	SRR5643663	five period of Gastrodia elata	46.270
	SRR5643664	five period of Gastrodia elata	48.840
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	51.680
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	44.300
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	52.460
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	50.580
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	54.730
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	64.390
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	51.990
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	55.020
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	58.520
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	60.660
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	49.940
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	49.940
SRP279888	Gastro	Gastrodia elata tuber	57.97
	Juven	Juvenile tuber	49.81
	Mother_Gastro	Mother tuber of Gastrodia elata	39.16
	Mother_Juven	Mother tuber of Juvenile	30.64