Gene detail

Detail information of GWHGAAEX006521/evm.TU.scaffold_186.12

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|743800164\|ref\|XP_010925793.1\|	1.77E-178	PREDICTED: uncharacterized protein At5g41620-like isoform X1 [Elaeis guineensis]
Swissprot	tr\|Q66GQ2\|Y5162_ARATH	6.00E-82	Uncharacterized protein At5g41620
trEMBL	tr\|M0RKC3\|M0RKC3_MUSAM	1.00E-166	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr10P21980_001}
TAIR	AT5G41620	2.00E-81	Unannotated protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000193	318108	322104	+

Transcript Sequence
>GWHTAAEX006521 CCGGAAATATTATCGGATATACGGATTCATCGTCCGAAAAAATAAAAACTTATCGGGTTCGTCACTATGAACCCGATAGTGTTTCTGGATGGGCGACAACGCGAGATGAAAAAATAGCCACTGCTGTCTAGTGTCTCGCAAGAGAAGGAAAACTGAGCGTAAAAAACTACGAGGCTGAGTTTCCGGGTACATAAAGGCGACAGCTCGATGACGGATAAAGGGCGAGAAAAAGGAAAAGCATCGAACGACGATGAAGACGATGATGATGGAGCACCTGCTAGAGAGCAGGAGTCCCTTTGGAGCATAAATCTAAGGAAAGGCCTCTTTGCGGTGGGTAAAAAGGGCGGACCTTTCACTCCTTCCCCTACCTGGAAGCTGGAGGAAGACGTCGGTGAGAAGCCTGAATCCGTCGTCGGCGCCGGCGCCGGGCAGTCGGTTTCTGCGAGGAAGCTCGCCGCGAATCTCTGGGAAGCGCAGGATTTGTTGGACGTTGCAGAGATGAATCGAAGGAGTCGGCGGCCTCGCCGCGGTGGGGATTTGGGAAGGGATCTTGATGATTCTTTGCCTTTTTGTTCTGCAGATCGGCCTGAGAGCGCTAGTAGTTTAACAAGGCGTGTTGTTGCTTCGGTAGTTCAACGTTACAAATCCAACGAAAGGAAGAATCTTGCTCAACAACCAGCTTCCCCTGCAGCCTACAGTAGCTCCACGGAGGTTACCCATTTTAAGCCTCCAATTAGTCCTGAATGTCCACTGGATCTGAAAGGCAGGGCTGGGGATACAGGATATAGCCTAAAAACATCAACCGAATTGTTGAAGGTGCTGAACCGCATATGGAGCTTGGAAGAACAGAATGCCTCGAATGTATCTGTTGCTAATGCCTTGAAAGTTGAGTTGGAACATGCGGGGGCACGCATTCAGGAGCTTTTGCGTGAGAGAAAAGAGCATCAGCGTGAAATCAATGATCTGATGAACCGGATTACTGAAGATAATGTGCTTAGGAAGAATAAGGAGCACGATAGGATGAAGGCTGTGGTTCGGTCAGTAAGAGAAGAGCTTGAAGATGAGAGGAGTCTAAGAAGACGGTCTGAAAGTTTGCATCGGAAACTGGGAAAGGAATTGTTTGAAACAAAAACTGCTCTATCAATGACTCTCAAAAACTTGGAAAAGGAAAGGCAAGCGAATGGTTTGTTGGTGGATTTCTGTGATGAGTTTGCAAGGGGAATTGTACAGTATGAGAAAGAAGTGAGGGAACTAAAGAAGAAGCTCACAAAGGATTGTGAGCGGAAGATTGACGGTTTGCTGCTTCATATATCTGAAGTTTGGTTGGATGAAAGATTGCAGATGCAAACGACTGAATCATGCAGTGAGAAGGCTAACAAAGGCATCATAATAAGTAGGTTGGAAGAGGATATTGTCTCATTTCTTCAAGCTAGACAAGCCAGCAGCATTAAGGATGACATCGAGCAGAATCATTGTAATAATATGCGGCGGCAATCCCTCGAGTCATTTCATTTAAATGGGACAGTCAGCGGGCCGCATGGCGTTGAAGATGATGAGTCTGTTGCAAGTGACCTCCATTGCTTTGAGCTCAACATGGATAAAAGTAAGGAAGGGGCTCATGATCATTCAAAGTCACAGTGTGAAGTTGGCACCAGAAGCATTGAATCCGCAAGACAATCATGTTCTGGGAGAAAAGCAACAGGATTCATTAAAAGCACCAAAGGCAAGAATTTATCCATGTCATTTGAAGGACTTGACGGGCAACCAGAAAGCACGGAGTTGGGAAATCTAGTCTACTCAAAGACAGATACTTATTCTGAAATTGCTGATGCAGAAAAGGGTGATGCTTCTATTATCATCAATAAACCATCAAATTCTAATTCTGCTGGCATCTGCGAAGGGAATATGAATGCCATAAATGGTTCAAATCTATCAGTTCATTATACTGGGAACAGCAAGGTGCATCATGATAGCTATCTAGGGGAAATAAGCCATAGCAAACTATCAGGAAGAGAGCATTGCCTCTCAAACAATGGGGACAATAATATCACAGGAAATTTCTTTTCTGCATCGGGTCCAGTGCAACAGTGGAATCATAAAGAGGTATCTACTGCTGAAATCACAGAATGCTCATTAAAACTACCGCAGGGACTGAAAGAGAGCACTTTGAAAGCAAAACTGCTTGAAGCAAGGATAGAGGGAAGGCATGCTCGTTTAAAAGCTTTGAACGGCACGTGAATTGCAACATCAGTGCAACAAATTAGCTACAGGCAGTTATATGAAGATGCTAGTTTTAGTTTAAAGATGATTTTCTTCCAAGGGAAAAACTATGAGTCAGATTTTTTCTAGTAGTTTTTGACGAGTAGATCACGGTAGCAACAAATAACTCTTTTAGCCTTCTCGTGTATTATGTGCAAGTCAATTGCGGATTAATTTTTGAAGTGTCGTATGTATATTTGGTGCTATAGGAATTTTTACAGTACTTGTTTAAATTTAGTGTCTTTGGTGGATTTTCTTTTGCTCATGCAATGCTCCTTGAATTCGTAAGCATGATTCGAATCAAATTGATACGAATGAGGATTTATTCTTAAAA

Network for GWHGAAEX006521

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	17.280
SRP064423	SRR2545915	Juvenile tuber	17.710
SRP108465	SRR5643513	five period of Gastrodia elata	17.780
	SRR5643514	five period of Gastrodia elata	19.640
	SRR5643515	five period of Gastrodia elata	18.260
	SRR5643524	five period of Gastrodia elata	18.520
	SRR5643525	five period of Gastrodia elata	12.080
	SRR5643528	five period of Gastrodia elata	9.080
	SRR5643658	five period of Gastrodia elata	12.770
	SRR5643659	five period of Gastrodia elata	21.400
	SRR5643660	five period of Gastrodia elata	22.830
	SRR5643661	five period of Gastrodia elata	19.340
	SRR5643662	five period of Gastrodia elata	17.940
	SRR5643663	five period of Gastrodia elata	22.260
	SRR5643664	five period of Gastrodia elata	19.290
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	15.020
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	11.570
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	12.550
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	13.650
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	12.090
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	14.960
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	13.390
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	12.230
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	10.900
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	10.500
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	15.260
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	15.260
SRP279888	Gastro	Gastrodia elata tuber	21.09
	Juven	Juvenile tuber	23.25
	Mother_Gastro	Mother tuber of Gastrodia elata	14.62
	Mother_Juven	Mother tuber of Juvenile	16.97