Gene detail

Detail information of GWHGAAEX006525/evm.TU.scaffold_186.16

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|383785828\|ref\|YP_005470397.1\|	1.00E-89	dTDP-glucose 4,6-dehydratase [Fervidobacterium pennivorans DSM 9078]
KOG	KOG0747	0	Putative NAD+-dependent epimerases
nr	gi\|720055527\|ref\|XP_010273412.1\|	0	PREDICTED: probable rhamnose biosynthetic enzyme 1 [Nelumbo nucifera]
Swissprot	tr\|Q9LPG6\|RHM2_ARATH	0	UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose 4-keto-reductase {ECO:0000303\|PubMed:17190829}
trEMBL	tr\|F6H2K4\|F6H2K4_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB46191.1}
TAIR	AT1G53500	0	NAD-dependent epimerase/dehydratase family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000193	469303	471212	-

Transcript Sequence
>GWHTAAEX006525 TAATCTTCGTGCCGGATTTGATGCATTCGTTGTGTTATTTCGAAGACCTGTTCTTTGTTTGTCGAATCGATGATTTTTCCGCTTCTTGTTGAGTATGGTGCTCGATTTTGGGTTCTTTTGATCAACCTACTTTGATTGCTACGAGAGCGGAAGATTTGAGATACTTGAAGAAAAGACTTAAAAAATGGGGGGCACTTACACGCCAAAGAACATCCTCATCACCGGCGCGGCTGGGTTTGTCGCCTCCCATGTTTGCAATCGGCTTATAAGAAACCACAGAGAGTACAAGATTGTGGCTCTAGACAAGCTTGATTACTGCTCCAATCTGAAAAACCTTCTCCCTTCGCGCTCCTCACCGAACTTCAAGTTTGTTAAAGGAGACATAGGAAGCGCTGATCTCGTGAGCTTCCTCCTCATGAGCGAGTCCATAGACACCGTCATGCACTTTGCAGCGCAGACGCATGTGCACAATTCCTTCGGCAACTCGTTCGAGTTCACGAAGAACAACATCTACGGCACCCACGTTCTGCTGGAGGCCTGCAAAGTTGCCGGGAGCGTCCGACGGTTCATTCATGTCAGCACCGACGAGGTTTACGGAGAGACGGATGCGGAGGCCGTGGTCGGAAACCACGAAGCATCTCAGCTGCTTCCCACGAACCCTTACTCAGCCACCAAGGCGGGGGCAGAGATGCTCGTCATGGCTTACGGGAGCTCCTACGGACTTCCCGTCATAACGACGAGGGGGAACAACGTCTACGGGCCAGGTCAGTTCCCCGAAAAGCTCATAGCCAAATTCATCTTCCTGGCCATGGCAGGAAACCCCCTTCCGATTCACGGCGACGGATCCAACGTCAGAAGCTATCTCTACTGCGAGGACGTCGCCGAGGCCTTCGAGGTCGTTCTTCACAGAGGCGAAGCCGGCCGCATCTACAACATCGGAACGAACAAGGAGAGGAGGGTGATTGATGTTGCCAGGGACATCTGCACCCTCTTCTCTCTTGATCCTGAAGCCGCCATCAAGTTCGTCGAGAACCGGCCCTTCAACGATCAGCGGTACTTTCTGGACGACCGGAAGCTGAAGGAATTGGGGTGGTCGGAGCGCACTGCATGGGAAGACGGGCTGAGGAAGACGATGGAGTGGTACATTGCCAATCGTGATTGGTGGGGCGATGTTTCTGGAGCCCTGCTTCCCCATCCTAGAATGCTCATCATGATACCCGGAGTTGATGCCAAGGTAAGGAGTTCTTCTCACCTTAGGGTTGCCCAAGTAGAGCATGCTTCTTCAGAGACTCATTGATCAAGTTTGCTTTTTGAACCCATTAAAATGTTTTTGAGGTTGTAGTGAAGTTTATATCTGATTTTCAAGTCTGGGTTTTGCATTGTAGATGATAATAAGGTCATACTTCTTTCACTCAATGATATACAATGGATCAGCATTCTGCTGCATTATAAAAAAATTAGTTGGTTCTTTTGTTCTTTAGGATTATATGATTGTTTCAGTCTGGTAAGAGGCCTGATAGTTATTTTATTGCCTTATGGTATTTGCTTACTTTTTCAGG

Network for GWHGAAEX006525

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF16363.4	GDP_Man_Dehyd	11	316	3.30E-68

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12450	RHM	Metabolic pathways	map01100
K12450	RHM	Amino sugar and nucleotide sugar metabolism	map00520

Gene Ontology

GO term	Ontology	Name
GO:0009225	Biological Process	nucleotide-sugar metabolic process
GO:0008460	Molecular Function	dTDP-glucose 4,6-dehydratase activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	5.620
SRP064423	SRR2545915	Juvenile tuber	5.860
SRP108465	SRR5643513	five period of Gastrodia elata	3.610
	SRR5643514	five period of Gastrodia elata	3.600
	SRR5643515	five period of Gastrodia elata	8.550
	SRR5643524	five period of Gastrodia elata	6.130
	SRR5643525	five period of Gastrodia elata	6.380
	SRR5643528	five period of Gastrodia elata	8.410
	SRR5643658	five period of Gastrodia elata	6.570
	SRR5643659	five period of Gastrodia elata	2.740
	SRR5643660	five period of Gastrodia elata	1.170
	SRR5643661	five period of Gastrodia elata	3.040
	SRR5643662	five period of Gastrodia elata	5.030
	SRR5643663	five period of Gastrodia elata	2.640
	SRR5643664	five period of Gastrodia elata	2.510
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	4.730
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	2.180
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	3.800
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	3.780
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	3.290
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	1.970
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	3.970
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	4.230
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	7.990
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	3.820
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	4.130
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	4.130
SRP279888	Gastro	Gastrodia elata tuber	3.70
	Juven	Juvenile tuber	1.63
	Mother_Gastro	Mother tuber of Gastrodia elata	15.00
	Mother_Juven	Mother tuber of Juvenile	7.05