Detail information of GWHGAAEX006532/evm.TU.scaffold_186.22


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|334141183|ref|YP_004534389.1|1.00E-6750S ribosomal protein L3 [Novosphingobium sp. PP1Y]
KOGKOG31416.00E-152Mitochondrial/chloroplast ribosomal protein L3
nrgi|672133707|ref|XP_008790485.1|1.85E-168PREDICTED: 50S ribosomal protein L3-2, chloroplastic [Phoenix dactylifera]
Swissprottr|Q9LRN8|RK3B_ARATH7.00E-15750S ribosomal protein L3-2, chloroplastic (Precursor)
trEMBLtr|M0T0D2|M0T0D2_MUSAM7.00E-165Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr5P21030_001}
TAIRAT3G174656.00E-152ribosomal protein L3 plastid

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000193601669626982+
Transcript Sequence

Network for GWHGAAEX006532

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00297.21Ribosomal_L31312313.00E-17
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02906RP-L3, MRPL3, rplC Ribosome map03010

Gene Ontology

GO term OntologyName
GO:0006412Biological Processtranslation
GO:0003735Molecular Functionstructural constituent of ribosome
GO:0005840Cellular Componentribosome

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms21.930
SRR2545915Juvenile tuber25.960
SRP108465SRR5643513five period of Gastrodia elata27.180
SRR5643514five period of Gastrodia elata27.240
SRR5643515five period of Gastrodia elata25.340
SRR5643524five period of Gastrodia elata28.560
SRR5643525five period of Gastrodia elata26.670
SRR5643528five period of Gastrodia elata26.500
SRR5643658five period of Gastrodia elata24.650
SRR5643659five period of Gastrodia elata37.670
SRR5643660five period of Gastrodia elata37.590
SRR5643661five period of Gastrodia elata34.540
SRR5643662five period of Gastrodia elata36.600
SRR5643663five period of Gastrodia elata34.910
SRR5643664five period of Gastrodia elata32.470
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_133.730
SRR6049655Rhizomagastrodiae_C368-T10_good_125.060
SRR6049656Rhizomagastrodiae_C368-T07_good_139.110
SRR6049657Rhizomagastrodiae_C368-T07_good_129.500
SRR6049658Rhizomagastrodiae_C368-T04_good_135.580
SRR6049659Rhizomagastrodiae_C368-T04_good_133.380
SRR6049660Rhizomagastrodiae_C368-T01_good_134.630
SRR6049661Rhizomagastrodiae_C368-T04_good_137.520
SRR6049662Rhizomagastrodiae_C368-T01_good_140.090
SRR6049663Rhizomagastrodiae_C368-T01_good_140.350
SRR6049664Rhizomagastrodiae_C368-T10_good_137.760
SRR6049665Rhizomagastrodiae_C368-T10_good_137.760
SRP279888GastroGastrodia elata tuber 30.76
JuvenJuvenile tuber31.75
Mother_GastroMother tuber of Gastrodia elata 23.62
Mother_JuvenMother tuber of Juvenile 24.75