Detail information of GWHGAAEX006536/evm.TU.scaffold_186.27
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|262194962|ref|YP_003266171.1| | 7.00E-34 | serine/threonine protein kinase [Haliangium ochraceum DSM 14365] |
| KOG | KOG0192 | 1.00E-166 | Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs |
| nr | gi|743770279|ref|XP_010915427.1| | 0 | PREDICTED: tyrosine-protein kinase SRK3-like [Elaeis guineensis] |
| Swissprot | tr|Q2MHE4|HT1_ARATH | 1.00E-105 | Serine/threonine-protein kinase HT1 |
| trEMBL | tr|M0STL0|M0STL0_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr4P30980_001} |
| TAIR | AT5G58950 | 1.00E-166 | Protein kinase superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000193 | 802064 | 816109 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX006536
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF07714.16 | Pkinase_Tyr | 277 | 524 | 2.60E-62 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Protein Kinases Family | TKL-Pl-4 |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006468 | Biological Process | protein phosphorylation |
| GO:0004672 | Molecular Function | protein kinase activity |
| GO:0005524 | Molecular Function | ATP binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 44.170 |
| SRR2545915 | Juvenile tuber | 42.060 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 29.270 |
| SRR5643514 | five period of Gastrodia elata | 29.530 | |
| SRR5643515 | five period of Gastrodia elata | 34.890 | |
| SRR5643524 | five period of Gastrodia elata | 29.870 | |
| SRR5643525 | five period of Gastrodia elata | 63.820 | |
| SRR5643528 | five period of Gastrodia elata | 79.670 | |
| SRR5643658 | five period of Gastrodia elata | 67.550 | |
| SRR5643659 | five period of Gastrodia elata | 28.660 | |
| SRR5643660 | five period of Gastrodia elata | 28.300 | |
| SRR5643661 | five period of Gastrodia elata | 32.400 | |
| SRR5643662 | five period of Gastrodia elata | 34.930 | |
| SRR5643663 | five period of Gastrodia elata | 34.450 | |
| SRR5643664 | five period of Gastrodia elata | 31.330 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 21.500 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 28.860 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 18.950 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 17.760 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 19.660 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 23.190 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 18.990 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 18.150 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 19.700 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 20.400 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 25.590 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 25.590 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 23.17 |
| Juven | Juvenile tuber | 24.87 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 73.55 | |
| Mother_Juven | Mother tuber of Juvenile | 114.41 |