Gene detail

Detail information of GWHGAAEX006538/evm.TU.scaffold_186.30_evm.TU.scaffold_186.31

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|436670175\|ref\|YP_007317914.1\|	3.00E-20	WD40 repeat-containing protein [Cylindrospermum stagnale PCC 7417]
nr	gi\|672137347\|ref\|XP_008792397.1\|	0	PREDICTED: LOW QUALITY PROTEIN: protein SPA1-RELATED 4-like [Phoenix dactylifera]
Swissprot	tr\|Q94BM7\|SPA4_ARATH	0	Protein SPA1-RELATED 4
trEMBL	tr\|I1HR44\|I1HR44_BRADI	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:BRADI2G48657.2}
TAIR	AT1G53090_2	0	Unannotated protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000193	901090	912755	+

Transcript Sequence
>GWHTAAEX006538 CTATACTTCACTTCCATATAAAACAAAGAATAACTTAGTCACATTACATATTTTTACGAATTTTTTTCAACAAAATTCGACTTAAATAACGAACTCTAGCAGAAGCGGCACAATTTTCCTCTCCAAGATCTCATTTTTTTCAAGGCACTCTTTGATTCTTCTTCTTCTTTTCCTCCCATCTCTTCTAAAAAAATAAGAGATTGGTCGGGGACTGCTCTCGATCTGAGGAAGCGAGGAGTGGCTTACGAACAGGGGAAAGGATAAAAAGCTCTGTTCTTTTTTCTTATGCTTCTCTCATACAGATCTGCGCTTCCATTTTGGCTTCTTCTACAGCACAATTCAGAGCCCCGGTGATTCCAAAGGCCTGATCTTTGGGGCAGAATGGGCTAAAAATGGAGAGATCTTCGACTTCAAGGCACTTCAAATTCCCGACCAGCCGAAAGCAAGGAAGAATTAGCCTGAGAGAGTGGGTGGACAGACCCGGGCGGTCTGTAAATTCTCTGGAATGCCTTCGCATTTTCCGGCAGGTGGTTGCGGCGGTGCAGAATATGCACAACAAAGGAACTGCGGTTAACAACATCAGGCCATCTTGCCTTGCTGTTTCGCCCCTCGACTGCGTCTCATTCATCGAAGCTTCTTCGTCCTGCTATGATTTCGAGTTCAGTTGGTACAGAAGCCCTGCTGAAGAAGGTCAGGGGCAGAGCGCATTCGCCGCAGATGTGTATAAATTAGGCGTTCTGCTGTTCGAGCTGTTTTGCGGGTTTGATAGTGACGAGCAGAAGCATGGGCTGATGCTGAAGTTGAGAGATAGAGTGCTTCCACCGCAGATGCTGCTCAGGTGGCCGAAGATCGCTTCTCTTTGCCTATGGCTTATGCACCCCCAAACCAGTAATCGACCTGAATTGAGTCATATTTTGCAAATTGACATTTTGAATGAAGAAAGAGATGACTTCGAAGAGCATGAAGTGGCCATGAAGTTGAGGGAAGAGATCGAAGTGCACGAGTCACTTCTTGAATTTCTCTTAAAGATGAAAAGAACAAAGCAAGCGTCCGCTAATAAGCTGCATGGCGTTATTTGTTTTCTGTCTAATGATATAGAAGAAGTGGTACGTCAGAGGTCATTCCTCATGAGGAAAAGCTCATTTCATGAAGAAGAGAATTGCGATTGCTCAACAGGCTGTAAATCGAAGAATCCATCACCCTCTTATAAAACAAATGATGACTTCACTTCCTCGGAATCTAAGAAGCGAATCAGGCTTGTCCATAAAGAGAAAACACTTTCAAAAAGCTCTCGAATCATGGATAACTTCAAAAAGCTGGAGGCAGCTTATTTCTCATTAAGATGCAAGCCCTCAAATTTAGCATCCAAACATCGTAGCAAAAAGTTAAAAGTTGACGATATTAGTAACATAGAATCAAACGACAAAACTGAGCAAAGCTCAGTTGATGACATGGTTTCCAAGCAATCTGAAGATGGTTACGGGATGGGAGAATGGATCAACCCATTTCTGGAGGGTTTGCGCAAATACTTAACTTTCAGTAAATTTAAAGTTTGCGCTGAGCTAAAACAAGGAGACCTCCTAAACTCACCAAACTTAATCTGCTCTCTTGCATTTGACCGAGATAAGCATTTTTTTGCCACCACCGGTGTGAATAAAAAGATCAAAGTTTTTGATTATAATGCAATCCTAAACGATGATCGTGATATATATTACCCTATGGTTGAGATGGTAGGCAGATCAAAGCTCAGCAATGTGTGCTGGAACAGTTATATTAAGAGTCAGATAGCATCTAGTGACTTTGAAGGTGTGGTGCAGGTGTGGGATGTCACTCGAACCCAAGTCCTTGTTGATATGAGGGAGCATGAGAAACGTGTGTGGTCAATTGACTTTTCATTAACATACCCCACAGTATTGGCTAGTGGAAGTGATGACTATACCACGAAGCTTTGGAATATTAATCAGGGAGGGAGCGTCAGCACTATCAGAACAAAGGTAAATGTGTGCTCAGTTCAATTTTCACCATCTGGTAATCTAATTGCAATTGGTTCTGCCGATCACAATGCATATTGCTACGATCTGCGTAACATAAGGTTACCTCTCTGCACCATTGTTGGTCATGCTAAGACTGTGAGTTATGTGAAGTTCTTGGATTCATCGACACTTGTATCTTCTTCAACTGATAGCACATTAAAGCTTTGGGACTTGTCGATGAATACATCGAGGGTGATTGACAGTCCTGCTCAGACATTCTCGGGGCATACAAATGTGAAGAACTTTGTCGGCCTCTCTATTTCGGATGGATATATTGCTACAGGTTCTGAAACAAATGAGATTTTTGTGTATCAAAAGGCTTTCTCTATGCCCGTCATGTCCTACCAATTTGGATGCATTGATCCAATCTCTGGGCTCGAGGATGATGGCGCTAGCCAGTTTATCTCCTGCGTGTGCTGGCGAGGAGACTCTCCTACCCTGCTTGCAGCGAATTCGACGGGCAACATCAAAATTTTGGAAATGATATGATTCTCTTGTTTTTTGTGTATTATATCATTTCTTTACTTACAAAAATATTCATATGTATGTATGTATATATGTATCTATGTATAGAATACAATTTTAATATATTTTTAAATTGTTTTTTTCATTGCAATGCTATCAGAA

Network for GWHGAAEX006538

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00400.31	WD40	488	521	0.007
PF00400.31	WD40	537	562	0.049
PF00400.31	WD40	570	604	0.0018

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	7.730
SRP064423	SRR2545915	Juvenile tuber	4.050
SRP108465	SRR5643513	five period of Gastrodia elata	5.860
	SRR5643514	five period of Gastrodia elata	6.080
	SRR5643515	five period of Gastrodia elata	8.920
	SRR5643524	five period of Gastrodia elata	3.820
	SRR5643525	five period of Gastrodia elata	20.140
	SRR5643528	five period of Gastrodia elata	22.380
	SRR5643658	five period of Gastrodia elata	8.630
	SRR5643659	five period of Gastrodia elata	9.110
	SRR5643660	five period of Gastrodia elata	15.990
	SRR5643661	five period of Gastrodia elata	18.210
	SRR5643662	five period of Gastrodia elata	22.340
	SRR5643663	five period of Gastrodia elata	13.620
	SRR5643664	five period of Gastrodia elata	20.260
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	1.620
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	0.640
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	0.580
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	1.630
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	1.490
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	1.790
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	1.950
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	1.920
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	0.830
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	2.170
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	0.390
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	0.390
SRP279888	Gastro	Gastrodia elata tuber	18.78
	Juven	Juvenile tuber	11.79
	Mother_Gastro	Mother tuber of Gastrodia elata	40.84
	Mother_Juven	Mother tuber of Juvenile	59.75