Gene detail

Detail information of GWHGAAEX006543/evm.TU.scaffold_186.37

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|428208930\|ref\|YP_007093283.1\|	6.00E-33	FHA modulated ABC efflux pump ATPase/integral membrane protein [Chroococcidiopsis thermalis PCC 7203]
KOG	KOG0065	0	Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily
nr	gi\|672109699\|ref\|XP_008791552.1\|	0	PREDICTED: pleiotropic drug resistance protein 12-like [Phoenix dactylifera]
Swissprot	tr\|Q5Z9S8\|PDR12_ORYSJ	0	Pleiotropic drug resistance protein 12
trEMBL	tr\|M0U0T1\|M0U0T1_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr9P16240_001}
TAIR	AT1G59870	0	ABC-2 and Plant PDR ABC-type transporter family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000193	1016962	1042956	-

Transcript Sequence
>GWHTAAEX006543 ATGAGCAACTGGGGAGTGGAGGAGGCGTTCGCGCGCACGGGGTCGCAGGCGTCGCGGCGGGGGCCGAGCCGCATCGATGACGACGAGGAGGCGCTCCGATGGGCGGCGATCGAACGGCTTCCGACGTACAATCGGGTTCGCGTCGGCATCCTCAGGTCCTTCGTCGAAGAGGAAGAGGCCGGCCAGTCCACGGAGGTGCACAAGGAGGTGGATGTCAGGAGGCTCACCGTCGACGAGCGTCAGGAGTTCATCGGCAGGGTCTTCAAGGTCGCCGAGGAAGACAACGAGCGCTTCCTCACCCGCCTCAGAGACAGGATTGAAAAGGTTGGTATCCAGCTGCCGACCGTGGAGGTTCGATTCGACCACGTAAGCATAGAGGCAAAATGCCAAGTGGGCAACCGGGCCCTACCAACGCTTACCAACTCAGCACGGGATATGCTGGACACGGCCCTGGAAGCCATCGGAATCCAGCTCACCAGGCGCACCACCCGCTCCATCCTCAGAGACGTCTCCGGCATTATCCGACCGTCCAGGATGACGCTTCTGCTGGGCCCGCCGGGTTCGGGCAAGACCACGCTGCTGCTGGCTCTAGCGGGAAAGCTGGGTCCCACTCTGAAGGTGTCCGGCGAGATCACCTACAACGGCCACTGGCTGGAGGAGTTCGTGCCGCAGAAAACGGCGGCATACATCAGCCAGAACGACGTCCACGTCGGCGAGATGACCGTCAGGGAGACCCTTGACTTCTCTGCCAGCTGCCAAGGCGTGGGCGCTCGATACGATCTTCTGATGGAGCTGGCAAGAAGGGAGAAGATGGCTGGAATATTTCCTGAAGCTGAAGTTGACCTCTTCATGAAGGCTAGGGCGATGGAAGGGGTGAAGAGTACCCTCCAAACGGATTACACGCTACGGATTCTGGGACTGGATATCTGCGCGGATACTATCGTGGGAGATGAAATGCAAAGGGGGATTTCGGGCGGGCAGAAGAAGCGCGTGACCACTGGTGAGATGATTGTCGGGCCGACGAACACGCTGCTGATGGACGAGATATCTACGGGGCTGGACAGCTCCACGACGTACCAGATTGTGAAGTGCCTGCAGCAGATCGTGCATTTGGGGGATGCAACGATCCTGATGTCGCTCCTGCAGCCCGCGCCTGAGACCTTCGATCTCTTCGACGACATCATCCTCTTGAGCGAAGGGCAGATCGTGTACCAAGGCCCTCGCGAAAACGCCCTCGAGTTCTTCAGCTCCTGCGGCTTTCGCTGCCCGGAGCGCAAGGGCGCCGCTGATTTTCTTCAAGAGGTCACCTCTCGCAAAGATCAAGCGCAGTACTGGACCGATCGCAGCCGCCCTTACCAATACGTTCCGGTTTCTGCCTTTGCCGAGCAGTTCCGTCGCTTCCACACCGGCGCGCGCCTCCAGAATGACCTCTCCGTTCCCTTCGACAGGACCCGTTGCCACCGTGCCGCGCTCGTCTACGACAAGAATCCGGTAGGATATTCTGACCTCCTCCGCTCCTCCTTCGCCAAGGAGTGGCTCCTCATTAAGCGCAACTCCATTGTCTACATCTTCAAGACCATCCAGATCATCATCACAGCTTTTATCACGGCGACGGTGTTCCTGAGGACGCGGATGCACAGGGACAGCATAGATGATGGCGGGATGTACATCGGCGCCCTTCTCTTTGGTGTTGTTGCTAACACGTTCAACGGCTTCGCTGAGCTGTCCATAGTCATCGGAAGGCTGCCCGTCTTCTATAAACAGCGGGACATGCTCTTCTACCCCGCATGGGTTTTCACCGTTCCGAACTTTCTTCTCACGATCCCCATGTCTATCATCGAGTCCATTGCTTGGATGGTCACATTGTACTACACCATCGGGTTTGCGCCGGAGGCTAGCAGCTTCTTCAAGCAATTGCTGATCGTGTTCATGGTACAGCAGATGGCTTCAGGACTTTTTAGGGTCTTGGCCGGGGTGTGCAGAACAACGGTGATCGCAAACACCGGAGGGTCTCTCTTGCTCCTCCTCATGTTTGTTCTCGGTGGATTTATTCTGCCAAGAGATGTAATACCCAAGTGGTGGAAATGGGCTTATTGGATTTCACCTTTAACCTATGGGTATAATGCTATTGCTGTCAATGAATTTTTGTCTCCAAAATGGATGAACAAATTTGTAGACGATGGATCAGGTAATGTTAAAAGTCTTGGCATTGCTGTTCTTGAAAATGTAGCAGTCTTCCCAGAAAAGAGATGGTACTGGATTGGGGTCGCTGCACTTTTTGGATTTGCTATTCTGTTCAATGTTCTTTTCACCCTTGCCCTAACGTATCTTAATCCTTTTGGAAATCCGCAAGCACCAATATCAGAAGAAACTAAAGCTCAGATGGAAGAAGTAAGTTTTGAAAATTGGTCAGAAAAGGCATTATTAGCTACCAATAAGGGCCAACAGAATGAACTGTCAACAAATAGTGAAGCTAATGCAAGAGAAATGATGGAGTTGCATATGAATGGTAATTTATCTACTGGTCTCAATGAACTTAAACGGGGTCCATCCATTGATGAGGACACAGCAGTGGTTGCTCATAAGAGGGGAATGATTCTTCCATTCACTCCTTTAGCAATGTCCTTTAATGATGTGAATTACTTTGTCGATATGCCTCCGGAAATGAATGAACAGGGGATCACTTCTGATAGGCTCCAGTTGCTGAGGGGAGTGACTGGCACTTTTCGTCCTGGAATCTTGACAGCCCTTATGGGAGTTAGCGGGGCTGGAAAGACTACACTTATGGATGTTCTGGCAGGCAGAAAGACTGGGGGATACATTGAAGGAGATATAAGAATCTCAGGCTATCCTAAATATCAGGACACTTTTGCTAGAGTGTCTGGTTATTGTGAACAAAACGATATCCATTCTCCTCAAGTCACTGTGAGAGAGTCGTTGATATTCTCCGCATTCCTCCGACTTTCTAAGGAAGTCAGCGCTGAAGAAAAGATGAAATTTGTGGATGAAGTTATGGAGTTGGTGGAGCTTGATAATCTCAAGGATGCCATTGTTGGCCTTCCAGGAGTCACGGGGTTATCAACAGAGCAGAGGAAGAGGTTAACTATAGCTGTAGAGCTTGTAGCTAATCCTTCCATAATTTTCATGGATGAGCCTACTTCTGGTTTGGATGCTAGAGCGGCCGCCATTGTCATGAGAACTGTAAGGAATACGGTCGACACTGGTAGAACAGTTGTTTGCACGATTCATCAACCAAGCATTGACATATTTGAAGCATTTGACGAGTTGTTACTAATGAAGCGTGGAGGTCAGGTTATATATTCTGGATCCTTGGGCAGAAATTCTCAAAAGATGGTTGATTATTTTGAGTCAATTTCTGGAGTTCCAAAGATAAAGGAAAAATACAATCCTGCAACCTGGATGCTAGAAGTGAGTTCTGTTGCTGCAGAAGGGCGTCTAGGAATTGACTTTGCCGAGCACTTCAATGCATCAGCTTTAAATCAGAGAAATAGAGCACTAGTTAATGAACTGAGTACTCCAGCTCCAGGTTCAAGTGATCTCCATTTCTCTTCTACATATGCTCAGTCCTCAATTGGGCAGTACAAATGCTGCCTTTGGAAGCAATGGTGGACCTACTGGAGGAGTCCTGACTACAACCTTGTTAGATTTTGCTTCACTTTTTTGACTGCTGTGATGCTAGGATCTATCTTTTGGAAGGTCGGCCAAAGGAGAGAAGATGCAAGCGATCTTCGTATTGTGACCGGGGCAATGTACGCTGCAGTTATATTTCTTGGCATCAACAATTGCTCTACAGCACAGCCGGTCACTTCCATCGAGAGAACCGTGTTCTATCGAGAGAAAGCTGCGGGAATGTACTCTGCCTTGCCTTATGCTCTGTCTCAGGTTATCGTGGAAATTCCCTATGTAATAGCTCAGTCTACTTACTACTCACTCATAGTGTACTCCATGATGGCTTTTCAATGGACAGCTGCCAAGTTTTTTTGGTTTTATTTCATCAGTTTCTGCACCTGCCTCTACTTCACCTACTACGGGATGATGACGGTGTCTATCTCGCCAAATCATCACATTGCTGCCATCTTCGCCGCAACGTTTTATTCCATCTTCAACCTCTTCGCCGGCTTCTTCATTCCAAAACCTAAAATTCCCAACTGGTGGATCTGGTATTATTGGATTTGCCCCGTGTCGTGGACAGTTTATGGGTTGATAGTGAGCCAATATGGCGATCTGGATCAGACGATTAGAGTTCCCGAAGAGCCTGACCAGATGATCAAAACATATGTTCAAGACCATTTTGGATATCACAAAGACTTTCTTGGTGTTGTGGGTGTTGGGTTGGTGGGTTTTTGTGCCTTCTTTGGCTTCGTCTATGCCTTGTGCATCAAAAAGCTAAACTTCCAACATAGTTGCGCTTTTCTTGAGCGACTTCAGCCTCTTGATGAAGATGGAGGAGCCGCTATTGCACATGAGCAGATGCTTAGGGCAGAAAAGGCGTCGATTTCTATCGAGATTGCAATAGCTTTTCAAAATGCAATTTACATAAAATGCAAAGTTGATAGATTGGTTAAATGGAGTACCTTGTCTCCGTCGTTTGCCGACAGTGCGGAACTTGAACTCCGTCTGGACCAGTCCTCGAAGTGTTCCAATCCGCCAAACAGACATGAGGGAATAGCCTAG

Network for GWHGAAEX006543

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF14510.5	ABC_trans_N	72	141	5.00E-10
PF00005.26	ABC_tran	167	349	1.20E-15
PF01061.23	ABC2_membrane	505	715	8.10E-43
PF08370.10	PDR_assoc	720	786	2.00E-26
PF00005.26	ABC_tran	902	1054	9.20E-20
PF01061.23	ABC2_membrane	1200	1413	5.50E-55

Protein Sequence

>GWHPAAEX006543
MSNWGVEEAFARTGSQASRRGPSRIDDDEEALRWAAIERLPTYNRVRVGILRSFVEEEEAGQSTEVHKEVDVRRLTVDERQEFIGRVFKVAEEDNERFLTRLRDRIEKVGIQLPTVEVRFDHVSIEAKCQVGNRALPTLTNSARDMLDTALEAIGIQLTRRTTRSILRDVSGIIRPSRMTLLLGPPGSGKTTLLLALAGKLGPTLKVSGEITYNGHWLEEFVPQKTAAYISQNDVHVGEMTVRETLDFSASCQGVGARYDLLMELARREKMAGIFPEAEVDLFMKARAMEGVKSTLQTDYTLRILGLDICADTIVGDEMQRGISGGQKKRVTTGEMIVGPTNTLLMDEISTGLDSSTTYQIVKCLQQIVHLGDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRENALEFFSSCGFRCPERKGAADFLQEVTSRKDQAQYWTDRSRPYQYVPVSAFAEQFRRFHTGARLQNDLSVPFDRTRCHRAALVYDKNPVGYSDLLRSSFAKEWLLIKRNSIVYIFKTIQIIITAFITATVFLRTRMHRDSIDDGGMYIGALLFGVVANTFNGFAELSIVIGRLPVFYKQRDMLFYPAWVFTVPNFLLTIPMSIIESIAWMVTLYYTIGFAPEASSFFKQLLIVFMVQQMASGLFRVLAGVCRTTVIANTGGSLLLLLMFVLGGFILPRDVIPKWWKWAYWISPLTYGYNAIAVNEFLSPKWMNKFVDDGSGNVKSLGIAVLENVAVFPEKRWYWIGVAALFGFAILFNVLFTLALTYLNPFGNPQAPISEETKAQMEEVSFENWSEKALLATNKGQQNELSTNSEANAREMMELHMNGNLSTGLNELKRGPSIDEDTAVVAHKRGMILPFTPLAMSFNDVNYFVDMPPEMNEQGITSDRLQLLRGVTGTFRPGILTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGYPKYQDTFARVSGYCEQNDIHSPQVTVRESLIFSAFLRLSKEVSAEEKMKFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYSGSLGRNSQKMVDYFESISGVPKIKEKYNPATWMLEVSSVAAEGRLGIDFAEHFNASALNQRNRALVNELSTPAPGSSDLHFSSTYAQSSIGQYKCCLWKQWWTYWRSPDYNLVRFCFTFLTAVMLGSIFWKVGQRREDASDLRIVTGAMYAAVIFLGINNCSTAQPVTSIERTVFYREKAAGMYSALPYALSQVIVEIPYVIAQSTYYSLIVYSMMAFQWTAAKFFWFYFISFCTCLYFTYYGMMTVSISPNHHIAAIFAATFYSIFNLFAGFFIPKPKIPNWWIWYYWICPVSWTVYGLIVSQYGDLDQTIRVPEEPDQMIKTYVQDHFGYHKDFLGVVGVGLVGFCAFFGFVYALCIKKLNFQHSCAFLERLQPLDEDGGAAIAHEQMLRAEKASISIEIAIAFQNAIYIKCKVDRLVKWSTLSPSFADSAELELRLDQSSKCSNPPNRHEGIA

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0016887	Molecular Function	ATPase activity
GO:0005524	Molecular Function	ATP binding
GO:0016020	Cellular Component	membrane

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	17.380
SRP064423	SRR2545915	Juvenile tuber	28.480
SRP108465	SRR5643513	five period of Gastrodia elata	68.770
	SRR5643514	five period of Gastrodia elata	58.220
	SRR5643515	five period of Gastrodia elata	104.390
	SRR5643524	five period of Gastrodia elata	66.700
	SRR5643525	five period of Gastrodia elata	93.550
	SRR5643528	five period of Gastrodia elata	69.960
	SRR5643658	five period of Gastrodia elata	46.880
	SRR5643659	five period of Gastrodia elata	51.160
	SRR5643660	five period of Gastrodia elata	41.410
	SRR5643661	five period of Gastrodia elata	68.140
	SRR5643662	five period of Gastrodia elata	63.400
	SRR5643663	five period of Gastrodia elata	50.800
	SRR5643664	five period of Gastrodia elata	68.070
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	60.550
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	55.770
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	61.250
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	33.860
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	34.520
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	30.920
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	47.440
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	29.340
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	57.500
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	91.070
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	76.830
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	76.830
SRP279888	Gastro	Gastrodia elata tuber	17.21
	Juven	Juvenile tuber	24.09
	Mother_Gastro	Mother tuber of Gastrodia elata	150.65
	Mother_Juven	Mother tuber of Juvenile	199.70