Detail information of GWHGAAEX006544/evm.TU.scaffold_186.40
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|459288815|ref|YP_007511972.1| | 0 | malate dehydrogenase [Bradyrhizobium oligotrophicum S58] |
| KOG | KOG1257 | 0 | NADP+-dependent malic enzyme |
| nr | gi|743770202|ref|XP_010915394.1| | 0 | PREDICTED: NADP-dependent malic enzyme-like [Elaeis guineensis] |
| Swissprot | tr|P36444|MAOC_FLAPR | 0 | NADP-dependent malic enzyme, chloroplastic (Precursor) |
| trEMBL | tr|O24550|O24550_VITVI | 0 | Malic enzyme {ECO:0000256|RuleBase:RU003426} |
| TAIR | AT1G79750 | 0 | NADP-malic enzyme 4 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000193 | 1084308 | 1112501 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX006544
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00390.18 | malic | 160 | 340 | 9.20E-79 |
| PF03949.14 | Malic_M | 351 | 604 | 7.10E-101 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0055114 | Biological Process | oxidation-reduction process |
| GO:0004471 | Molecular Function | malate dehydrogenase (decarboxylating) (NAD+) activity |
| GO:0004470 | Molecular Function | malic enzyme activity |
| GO:0051287 | Molecular Function | NAD binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 13.990 |
| SRR2545915 | Juvenile tuber | 27.260 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 17.580 |
| SRR5643514 | five period of Gastrodia elata | 16.600 | |
| SRR5643515 | five period of Gastrodia elata | 14.690 | |
| SRR5643524 | five period of Gastrodia elata | 14.870 | |
| SRR5643525 | five period of Gastrodia elata | 41.660 | |
| SRR5643528 | five period of Gastrodia elata | 83.080 | |
| SRR5643658 | five period of Gastrodia elata | 60.780 | |
| SRR5643659 | five period of Gastrodia elata | 3.370 | |
| SRR5643660 | five period of Gastrodia elata | 4.070 | |
| SRR5643661 | five period of Gastrodia elata | 2.780 | |
| SRR5643662 | five period of Gastrodia elata | 3.370 | |
| SRR5643663 | five period of Gastrodia elata | 2.420 | |
| SRR5643664 | five period of Gastrodia elata | 0.960 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 15.920 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 25.350 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 24.260 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 14.020 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 16.690 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 12.530 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 14.870 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 17.950 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 29.180 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 27.760 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 28.820 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 28.820 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 12.03 |
| Juven | Juvenile tuber | 39.61 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 62.80 | |
| Mother_Juven | Mother tuber of Juvenile | 117.30 |