Gene detail

Detail information of GWHGAAEX006547/evm.TU.scaffold_186.43

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG4210	3.00E-12	Nuclear localization sequence binding protein
nr	gi\|672157729\|ref\|XP_008798584.1\|	1.13E-21	PREDICTED: uncharacterized protein LOC103713433 [Phoenix dactylifera]
trEMBL	tr\|M0RK62\|M0RK62_MUSAM	8.00E-18	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr10P21370_001}
TAIR	AT5G56550	3.00E-12	oxidative stress 3

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000193	1159756	1164347	-

Transcript Sequence
>GWHTAAEX006547 CATCTATATATTTTAATATATACCAATACTCATCTTCATTCCCCCTTAACAAAGATACATATTCTTTCTTATAAATTATTATCTTCTCTGAATAGCCAATTTGTGAGCTTTGAAATATTTCAAAGATTCATGGATGAAATCCTTTTGTCAGCCGACGAAGAAGATTTCGCTGTGGAAGCTGCAGAGCCTTCGCCTCTGTTTGAGCTGTCCTCGCTCATGGCAGAACTCCCTGTCAAAAGGGGGCTGTCCAAATTCTTCAATGGGAAATCGCAATCCTTCTCTTCGCTTTCTCAAGTTAGGCGCACTGAAGATCTCGTCAAAAAGGAATGCCTTTTCAGCAAGAGGAGGAAAATTTGCAGGAGCATGAAGAAGATACCTTATTATGCGCAAAATTGTAGCAGCAGACTGGTTTCGAAGAAGGCTTCAGGGAATTCCAGTGGCTCTGTAATAGCTAGGAGCAAAAGCACTCCGGCTCAGCTGCAGAAGAGCTACCTGTATGTTTTTATCAAAGGAGAGGACGAGTAACTAACTATCTCAGAGATGAGAAGCTGCCTTAGTTTTTTTTTTTGGCTAAAGTATATCAACTTGCTCTTTTGCACCACCGATCGAGGATACAACTGCTTGTATAGCTCTTAGTTGGGGAAAATTTTAAATATTTTTTTATTATCATAATTATAGAGTATTAATATTATTATAACTGTTCTTCAACCAGACGCCTAATCATCATCATATACGAGTAGCCGCGACCCAAATACCCGTTCGGGTTAAAAAAGTGAATTCGCGCCCCATTTCATCAAAGGAATTTTTCTTGTTTTTTCCTTGAATTAGAATATAAATTTTTGTTATTTTAACTTCTTACCTTGATTGTATGATTTGCAAATTAAAAGGTTAAATGAAGCGACATCTTCATCAATTATTGTTGTTGTCTAATCGTTAGATGATTGATTAAATCATATGGAATCATCATCATAGTGGTACAATGATTATGCTAGATTGAGAAGAACTGATTCATTGGTGCAAGCATAATTGTTATTCACTTACACGCATGCACGAATATAATCATTTTATTGTTTACGTTGGAAACATAGAGTAGCATCATCAGTGCATGTTTAGATGATGAAATATAATAAACCATTTATAATGTATAAAACTTTGATAAAAATTAAGACATGAACATTCAGCTTATGGCATCATCAACCAGGAACATGAGAAAACATGAAACATATTGATGTAAGATTGTTGCACATCTATGTTTACATACTAAGTTTTCTTAGTATTCTATATCTGTTGTATATCTTTAATTTGAGTATGAGAAATGCAATCAAACAATTATGCTTGCTTAACCTTACAACAAGTATTAACATAAGATTAAAACAGGGTACAATTTTATTTAATGTGCTATCTAAAAGGTACTTTTAGAAAATGTAAATAATGGAACAAAAATAAAATGATAATTTATGATGTCTTCTTGGAGAAACTAGTTACAATGAACTAAGTGCTTCAACATACATTATAGCAAGCATTAAGGGAAGGCTTGTGAGAACCTATTGTCATGAGCGTGCCAATAAGTTTGCCATGCCAAGGTATGAATAAACATATAAATATGCATGTATATCAAGCCTCTACTCGGGTATACAAAAATCTAAGTGCATATCCATGTGCATATGTATGCACACATGTGTACACATAAACTCATGTTTGTTCCTACTTTATTTGTTTATTACAATTCTTAATTTTTCTTCCTCTATTTTTTCAAAATGAAAAGCTATGTTACCCTAAAACATGCCTGAAAGTGCCTAATAAGAAGAGGGATAAGGCAGTACTCTAAGAGAGACATTGCACAATCGCACTTAATTCTTAACAGCTACTTATTTCCTTCTGTTGAAAGAATTTGGGGTATAATAATAGCAGAGGGTGCTTGAATTTAAGATGAACACTGGAGCAAGATTGATAGAACTAAGATGTAATTCTGTATTTTTGAGCATATACGAGCTAACCCACTTAAACAAGCTTTGGCTTAGTTTGTGTTAGATCTGTTCTGAGCTTCAGTCTTGATTTGCAAATGTTTTTAGATAACCACAGTATTTTTAAATACAAAGCGGCAGCCAAAAGAGATCGGAAAGTTATCAACCTTTGATCAGCCTCGGATATAAGAAAGCAGAACGAACTCGGATTCAACAACCTTTGATCAACATCGACTTCACTCGACGTCGATCTAAAAGAGGTACAAAGAACGAGGTACAACATTACAGACTCGCAAGAACTCACCAAGTCAGCCACTCTGAAGAAGACACGACAGTTGGCATGATTTTCCTTAAAATACAGCGGAAAATCAGGCCGCCAAAGCAGCCCCGCTGGCTCAGGACTTCGTGTGGAACGGCTTGTACTTACGGAGCCCCGACACGACACCCTCGATGGAGCCAATAGCAGCAGCCAGCGAGACGAGCAAGCAGAGGCAGCTCAAAGTTCGCAGCATGATGGCCTTTGGGCTGCTCCACGCCATCCTCTTCTGAGCCATGTACATCTCGATGGGAAAATACACAGTCAGCGGCCAGAACGCAACGGATCCCAGGAAGCCTAATATGTCGTTGAAGAAGGGCATGAGGATGGCAAGCAGCGTGCATATCACCACGAACACTGTTCTCCAGACCAACCTGAACACGCTGAGCGACAGAGGAAAAGACTCGGATTCCACAACGACTATCTCCTTGGTCAGCATCTTCACATTCGGCCACTTTTTTACCACCGTGTCCTCTACAATGGCGAAGACCGGCTGGCAAAATACCTGATACGCTCCCAGCAGATGAACGACTATGCAGATGTTGGCGATGTCTATTAGCCAGAAGGGCTCGTAGAAGCCGAATCCGGTGAGCATGTTTCCCGGGGCCTTGTTTCCGAAGGCAGCATAGCCCAAGCACCCACAGAGCAAGTAGAACACCGTCGTCGTCGACACCCCGATCATGCTCGCCTTCTTCATGACTTTGTTCTCCGGCGGCGACGCCCTCAGCGTGTCCTGTATCTCGATCAGGACCGTGGCGTAGGAGTACGCAAATGCAATGTTCCCGAGGGCTTGGAAGACATTCCATATCTTCTCCATCTGAGTGACGTCAACGCCGACGGCGGTTCCAGTCAGAGTGGATTCCCCGGTGCTCCCTGCCGGAAATAAAGAAATTGTAAAAAGTTGTTTTAGTTTAGTTGTTGAGGTTCATATAAAAGAAGGGTACCCTTGATGATTTGTACGAGAGAGAGAGCGACGCCGATGGACGCGTACGAGAAGGACATGGCCGCGGCGACGACGGAGAGCCAGGAGATGTTGTGGAGGTTGGGGAACTGCGAGAGCAGAATCTGGCTGGCCCCAAAGCCTATCATGTAGACGGTGTAAGAGACCCCGCAGTCGGCGGCGTGCCCCTTCTCGTGGTAACAATGGGACTTCACTATAGCCCTGCCATTCTTGACATGTCAGCAACTAAGATAAAATATTGCGAGAGAGAGAGCGGGGATGGAGGAGCTTACGCGGCGCTGATGGAAGCTGTGATGGTGTAGCCGACGGCGGTGCCGCATAGATTGATGTACTGGCAGATGCCGCACATGTATATCTGCATCTTGCCGAGATTCGATTTGACTGCGCTCATGTAATTGTAGTTCCGTTTCCCGGAGATAGGGTCGGCGGTGCGGTAGCAGTCGGTGAGGAGGGTGGAGGTGAAGAGGGTGATGAGAGAGAAAACGGTGAGAGTGAGGGGCCCGACGATCCAGCCCAGCTGAGCCATGGCCCATGCCAGGGACAAAACACCCGACCCGATCACCGCCGTTATGATGTGTGAGCTCGCCGTCCATAGCGTTCCTGCAAAACCCTTGCAACTTAACAAGTATAAATGAAGTTAAAAGCTTGAAAGAAAAGACAGATGCTCGAAAATGAAAACAAAACGAAGATAATGAAAGCGTTGTTGGAGCAGGAGTTCAGGAGGCCCGGATACTGCCTCTCTGTTTGGGAAGGCCATGCCGTGACCTCCCAGACTTGGGAATTTCGGCACAATGACGAAGGAGAAGGCGGTGGAAAAGGATACAGCTTCCCCGCCAGAGTTCTAATGATACGCACGCCGCACATTGCAGAAACTGCCCTTGGAATACATTTGCGGTCGGCTAAAGTGTGTGTTGCATCACTTCTTTGTGGGGATAATCAAAATTTGAATGTCAAAACAAGCTTATACGAAAACTATTCTAATCCGCTGGCTAATGTGCTGCATATCATTCTATTATATTACAAAATGAAATTATTTCAAATAATGACTGGAAATCCTTCAATTGCCGCCAATCAATGTTTGAATTTAAACCAAACAAAATTGTACGAATTTTATTTGGTTCGATTCCGACATGAAAGAGAGAGAACAAAT

Network for GWHGAAEX006547

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	11.040
SRP064423	SRR2545915	Juvenile tuber	4.900
SRP108465	SRR5643513	five period of Gastrodia elata	16.330
	SRR5643514	five period of Gastrodia elata	3.080
	SRR5643515	five period of Gastrodia elata	9.610
	SRR5643524	five period of Gastrodia elata	5.060
	SRR5643525	five period of Gastrodia elata	3.020
	SRR5643528	five period of Gastrodia elata	1.520
	SRR5643658	five period of Gastrodia elata	3.140
	SRR5643659	five period of Gastrodia elata	1.270
	SRR5643660	five period of Gastrodia elata	2.170
	SRR5643661	five period of Gastrodia elata	0.840
	SRR5643662	five period of Gastrodia elata	2.350
	SRR5643663	five period of Gastrodia elata	1.760
	SRR5643664	five period of Gastrodia elata	2.550
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	6.190
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	14.730
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	4.460
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	9.690
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	7.880
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	8.590
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	4.240
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	6.050
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	2.620
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	1.390
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	4.260
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	4.260
SRP279888	Gastro	Gastrodia elata tuber	8.52
	Juven	Juvenile tuber	17.65
	Mother_Gastro	Mother tuber of Gastrodia elata	16.82
	Mother_Juven	Mother tuber of Juvenile	21.08