Gene detail

Detail information of GWHGAAEX006552/evm.TU.scaffold_186.48

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|672179108\|ref\|XP_008809713.1\|	1.51E-130	PREDICTED: probable WRKY transcription factor 72 [Phoenix dactylifera]
Swissprot	tr\|Q9LXG8\|WRK72_ARATH	1.00E-87	Probable WRKY transcription factor 72
trEMBL	tr\|A0A061EM50\|A0A061EM50_THECC	1.00E-108	WRKY DNA-binding protein 72, putative {ECO:0000313\|EMBL:EOY03394.1}
TAIR	AT5G15130	3.00E-87	WRKY DNA-binding protein 72

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000193	1212080	1216260	-

Transcript Sequence
>GWHTAAEX006552 TCAACTGTTACAGGTTAAGTATCTTTATAAAATAGAGGAGGAGAAAGAAAGAAAAGGCAAGAGAAAGCTGAGAACGGGTAAGAAGTAGAGAGAAGGTGTATTAATGGAGGCTGGGATGAATCAGAGGCCTCTTCCTGTAGCCAAGAAGGAGCTGAGGAACGGAGTTATTGCTGATGGGGATTCTGAACAGAGATTTGTAAAGGCGTCACCAGCAAGAAGTAGTGAAAGATCAGCAGCATCTGCATCTAGGCCATCATCTAACTCCAAGGATTCCTCTACAACCAGTCAGGATGATCAAATAGAGTCAACTAAAGCAGAAATTGGAGAGATTAAAGAAGAGAATCAAAGGCTGAAAACCTTGCTATCACAAATTGTGAGAGATTACCAATCTCTCCAGATGCACTTCTTTGAAATATTGAAGCAAGAACGGCCTAAAAAGGAGGCAGATGAGCTCACAGCACCTATCTCACATGAATCCGAAGAAGCTGAGCTTGTCTCTCTCAGACTCGGTACAAACTCAGTCTCAGGAGCCATAAAGCTTGAAGAAAAGACAAACACAAGTAATAAAACTGAAGAAGGATTAACTCTAGGATTAGACTGCAAGTATGATATTAATAATAGTAATTGTGGGAACAAAGAGCTGGCATCAAACCCTAGTCAAGAGGAAAGCCTTGAGGAGGCAAAGGAAGACGAAGCGGTTAGTGATCCCATAAGTCCACCGAGCAAAAACGTGAAGAATTTAAGATCTGGAGATGATGAAGCGGTGCAACAAACGCATGTCAAGAAAGCAAGGGTTTCAGTGAGAGTGAGGTGCCAAACCCCAACGATGAATGATGGATGTCAATGGAGGAAGTATGGGCAGAAGATTGCGAAGGGGAATCCGTGCCCACGAGCTTACTATCGATGCACAGTCGCACCAGCTTGCCCAGTCAGAAAACAGGTGCAACGATGTGCTGAGGACATGTCAATACTAATCACTACCTATGAAGGAAATCACAACCACCCCCTTCCAATGTCAGCCACTGCCATGGCCTCGACCACCTCGGCCGCTGCCACCATGCTAATGACGGGCTCTTCCACCTCCACCCATTCCGGCAGCATCGGCGCCATAACTCAGCCAATCTCAGCTCCCTTCCCCTCCTCCAATAACCCTTCCATCGCCGGCGTAAATCACCTAAACTTCTCAAGAACATCAACGCCCTTCTACCTACAAAACACGACAATCTTGCCTTCGCCTTCCCACTCCACAATCACACTCGATCTCACCGCTCCACCGTCCTCCGCCGCCCAGTACCTCAAAATCCCATCCTGTCCCAGCTTCAGCATCTCAATGCCATCCTCTTGGAGCAACAGAGGGTACATTAGCTCTTCTTACCAATCCCATCCGCAGAATTCGACGGCGTCGTTGAACCAGAATTGCTTGACGGATTCGATTGCAAAGGCGATCACGTCTAACCCGAGCTTCCAATCGGTGTTGCATGCTGCAATCACGTCGTACGTTGGAGCAAGCGGAAGCCAGAGCGGTGGTGCCGGAACTCTTCAGCATGTTCAGAGCCATGGTGGCGTTTCGTCCGGCTCTAGTAGTCAGCATGGGAGCTTAGTGGTTCTGCAGCAGCCGTTGATGCCAATGTCAAACTCTAAGATTGCAACCTCTCAATCACTGGCTGACAGTAGTTGGGAACATATGAAGTGAGGCTTATGGGTATGCATGCAACATTGGCCATTTTAAGATAATTTTTTGGTTTTGTATTTTGTTGAGGAAAAGGATGAGGGTAAGATAATATGGTTGCAATTTAAAGATGTTAGGAGGTGTAAATAATAAAAGTAATAAATTTATGGCATGGATGTAGCAAAAAATTTTCTTGTATCTCAATTGTTAAGCAATCAAAATAATCTCATCTGTTATGCAATCATATCATACAATAGAAAATGTTTAGTTAATTAATGATGCAAAGTTAATTTTATGTTAGTTGAGGCACCGAATTGCTACTTCATATTGGGTGCAGATTTCTTCTTCTTCTAAATCCTTG

Network for GWHGAAEX006552

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03106.14	WRKY	243	301	8.70E-27

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	WRKY

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	14.890
SRP064423	SRR2545915	Juvenile tuber	11.960
SRP108465	SRR5643513	five period of Gastrodia elata	53.380
	SRR5643514	five period of Gastrodia elata	27.250
	SRR5643515	five period of Gastrodia elata	22.680
	SRR5643524	five period of Gastrodia elata	36.450
	SRR5643525	five period of Gastrodia elata	1.930
	SRR5643528	five period of Gastrodia elata	1.480
	SRR5643658	five period of Gastrodia elata	1.000
	SRR5643659	five period of Gastrodia elata	4.350
	SRR5643660	five period of Gastrodia elata	7.490
	SRR5643661	five period of Gastrodia elata	4.320
	SRR5643662	five period of Gastrodia elata	4.680
	SRR5643663	five period of Gastrodia elata	3.200
	SRR5643664	five period of Gastrodia elata	1.700
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	21.870
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	40.100
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	32.060
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	20.300
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	20.880
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	20.920
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	12.020
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	28.880
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	15.320
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	11.040
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	52.090
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	52.090
SRP279888	Gastro	Gastrodia elata tuber	6.04
	Juven	Juvenile tuber	8.68
	Mother_Gastro	Mother tuber of Gastrodia elata	46.60
	Mother_Juven	Mother tuber of Juvenile	74.35