Detail information of GWHGAAEX006553/evm.TU.scaffold_186.50
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|343085920|ref|YP_004775215.1| | 6.00E-52 | RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745] |
| nr | gi|672179134|ref|XP_008809727.1| | 0 | PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Phoenix dactylifera] |
| Swissprot | tr|C0LGP4|Y3475_ARATH | 0 | Probable LRR receptor-like serine/threonine-protein kinase At3g47570 (Precursor) |
| trEMBL | tr|A3A4G5|A3A4G5_ORYSJ | 0 | Putative uncharacterized protein {ECO:0000313|EMBL:EAZ22204.1} |
| TAIR | AT3G47090 | 0 | Leucine-rich repeat protein kinase family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000193 | 1292994 | 1304267 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX006553
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF08263.11 | LRRNT_2 | 57 | 93 | 3.00E-13 |
| PF00560.32 | LRR_1 | 149 | 170 | 1.6 |
| PF00560.32 | LRR_1 | 588 | 609 | 1.6 |
| PF00069.24 | Pkinase | 868 | 1092 | 8.80E-42 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Protein Kinases Family | RLK-Pelle_LRR-XII-1 |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006468 | Biological Process | protein phosphorylation |
| GO:0005524 | Molecular Function | ATP binding |
| GO:0005515 | Molecular Function | protein binding |
| GO:0004672 | Molecular Function | protein kinase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 10.560 |
| SRR2545915 | Juvenile tuber | 6.640 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 3.460 |
| SRR5643514 | five period of Gastrodia elata | 3.310 | |
| SRR5643515 | five period of Gastrodia elata | 6.950 | |
| SRR5643524 | five period of Gastrodia elata | 5.660 | |
| SRR5643525 | five period of Gastrodia elata | 2.660 | |
| SRR5643528 | five period of Gastrodia elata | 9.070 | |
| SRR5643658 | five period of Gastrodia elata | 3.390 | |
| SRR5643659 | five period of Gastrodia elata | 8.530 | |
| SRR5643660 | five period of Gastrodia elata | 3.060 | |
| SRR5643661 | five period of Gastrodia elata | 5.460 | |
| SRR5643662 | five period of Gastrodia elata | 7.540 | |
| SRR5643663 | five period of Gastrodia elata | 3.880 | |
| SRR5643664 | five period of Gastrodia elata | 5.670 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 3.640 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 3.710 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 4.680 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 3.730 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 3.320 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 4.060 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 5.970 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 5.900 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 6.160 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 6.430 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 3.600 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 3.600 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 4.94 |
| Juven | Juvenile tuber | 2.25 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 9.27 | |
| Mother_Juven | Mother tuber of Juvenile | 4.78 |