Gene detail

Detail information of GWHGAAEX006556/evm.TU.scaffold_186.53

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|430742304\|ref\|YP_007201433.1\|	8.00E-25	protein kinase family protein [Singulisphaera acidiphila DSM 18658]
KOG	KOG1187	0	Serine/threonine protein kinase
nr	gi\|743769617\|ref\|XP_010915102.1\|	0	PREDICTED: probable receptor-like protein kinase At5g15080 isoform X1 [Elaeis guineensis]
Swissprot	tr\|Q9LFP7\|Y5158_ARATH	0	Probable receptor-like protein kinase At5g15080
trEMBL	tr\|A0A067JER4\|A0A067JER4_JATCU	0	Uncharacterized protein {ECO:0000313\|EMBL:KDP21228.1}
TAIR	AT5G15080	0	Protein kinase superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000193	1344896	1362835	-

Transcript Sequence
>GWHTAAEX006556 TGCTACCCGAACTACCCAGAGACTGCCCCTTGACCCGGCGGGCATCTTCTTTCTTGTGTTCATCACTCGAATGCGAGCAGTCTTCCCCTCCGTCCTCCAACAACCTTTCGTCTAGGGTTTCGGCTATCATCCGTGTTTCGACCTCCTGCTTCGGCCTTCGCCTTCGCTTTCTAAACACAGAAGCGTCCGTTCATGGTGTTTTGTCTGTTTGCCAAATTACGTCTCTTAGAGATGGAGTCACCGGATTATTGCGCAGGATGAAGGCGAAAGAGTTGCAGAAGTTTTGAAGGGATGGGGTTATGGCAGGGGAAAGCGTTATTGAGCTCTGTGAAGTTGAAAGGGAATAGGGAGAAGTTATGGTTGGATGAAGATGATATGGAAGGAAGGAGTCTCCGTTGGTGGAATAGGATTTGTTTTGTAAACTGCGTCTTCAAGCCAAAACGGAATGGGTCTGTTGGAAGGTTGCGCATTGGAAATGACGATATTAAATCTATACAAAAAGATAGTGAAGATCAACCAACGACTGTTGCAGTATCTGGTTCTTCAACTTGCTGGGCTGAAGAAATATGTATTTCTTCTTTGAATGTTTGTCAAGAGCTTAGAGTCGCATCACAGCTGCGCAGGTTCACTTTTAATGAGCTCAAATGCGCGACAAGAAACTTCAGACCTGAGAGTCTTCTTGGTGAAGGTGGTTTTGGTTGTGTCTTCAAGGCCTGGGTGGAGGAGAATGGAACAGCTCCTATGAAACCTGGCTTAGGACTTACTGTTGCTGTTAAAGTCCTTAATAATGATGGACTTCAAGGGCATAAAGAGTGGCTGGCAGAGGTTAATTTTCTCGGTGATCTGATTCATCCTAATCTAGTTAAGCTGATTGGATACTGTATTGAAGATGATCAAAGGTTGTTAGTTTACGAATTTATGGCTCGAGGAAGTTTGGAGAATCATCTTTTCAGAAGGTCTCTTCCGCTTCCTTGGTCCACCAGAATGAAGATAGCACTTGATGCTGCAAAAGGCCTTGCTTTTCTTCATGAGGAAGCAGAAAGGCCAGTGATCTACCGTGATTTTAAGACATCTAATATCCTGTTAGATGTGGATTATACTGCCAAACTATCTGATTTTGGGCTTGCCAAAGATGGTCCTGTGGGAGATAAGACTCATGTGTCCACGAGGGTAATGGGAACATATGGATATGCAGCTCCTGAGTATGTTATGACAGGGCATTTAACGTCGAAGAGTGATGTATACAGCTTTGGAGTCGTCTTCCTGGAGATGCTGACCGGCCGCCGATCCATGGACAAGAAGCGGCCTCAGGGACAGCATAATCTGGTGGAATGGGCACGGCCCCATCTCAGGGGAAGGCGGCGCTTCTATCAGCTCATAGACCCTCGTCTGGAGGGTCATTTCTCCGTCAAAGGATCCTACAAGGCCGCCCAACTTGCGAGCCAGTGCCTCAGCCGGGATCCAAAATCTAGACCTCTCATGAGTGAAGTGGTTCAAGCTCTCAAGCCTCTGATCAACCTCAAGGACACGGCTGCCTCTTTCTCCTTATTCACAACCATTGAAGCAGCCAGAAACAAAAACTTGAATCCCAAAAATAGTTCTTTCAACATACTGGGATCATCCAAAGCTCAGGCCTCTTTATCCCGAAATGAACAGCAGCAGCTGGAGAGCAAGCTCTCGAACAGTGGAAGTGTGATGCCGCCGAACGAGGCTGCTGCTGTTGATAAGGAACCTTCAGTCAAGTCAACTAAATGAGAACAATCTGGTTAATCTTGTGGGAATTTGTATTTCTCAATCTTGTGAGATCCTGTCTGTTGTTATTTTTAGTATATATTTGCTGTAATAAATGGAGAGACAATTTTAGTTTTTTAAGGTGATTGAATAATGAAAAATGTTAATATAAATTTGAGAAATGTTTGAATATTCAAATATGAGAAATGTTATTTAG

Network for GWHGAAEX006556

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.24	Pkinase	127	402	3.30E-46

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_RLCK-VIIa-2

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	Biological Process	protein phosphorylation
GO:0004672	Molecular Function	protein kinase activity
GO:0005524	Molecular Function	ATP binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	52.190
SRP064423	SRR2545915	Juvenile tuber	72.280
SRP108465	SRR5643513	five period of Gastrodia elata	51.250
	SRR5643514	five period of Gastrodia elata	61.550
	SRR5643515	five period of Gastrodia elata	48.350
	SRR5643524	five period of Gastrodia elata	54.560
	SRR5643525	five period of Gastrodia elata	75.880
	SRR5643528	five period of Gastrodia elata	75.500
	SRR5643658	five period of Gastrodia elata	88.960
	SRR5643659	five period of Gastrodia elata	42.720
	SRR5643660	five period of Gastrodia elata	48.930
	SRR5643661	five period of Gastrodia elata	46.770
	SRR5643662	five period of Gastrodia elata	42.910
	SRR5643663	five period of Gastrodia elata	37.240
	SRR5643664	five period of Gastrodia elata	44.820
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	48.140
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	35.120
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	54.890
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	48.670
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	53.600
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	53.550
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	54.700
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	48.360
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	43.820
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	51.830
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	60.150
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	60.150
SRP279888	Gastro	Gastrodia elata tuber	51.02
	Juven	Juvenile tuber	61.40
	Mother_Gastro	Mother tuber of Gastrodia elata	29.80
	Mother_Juven	Mother tuber of Juvenile	42.47