Detail information of GWHGAAEX006557/evm.TU.scaffold_186.55
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 1.00E-112 | FOG: PPR repeat |
| nr | gi|695010445|ref|XP_009391896.1| | 0 | PREDICTED: pentatricopeptide repeat-containing protein At3g29230-like [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q9LS72|PP261_ARATH | 4.00E-113 | Pentatricopeptide repeat-containing protein At3g29230 |
| trEMBL | tr|M0SDW1|M0SDW1_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr3P11940_001} |
| TAIR | AT3G29230 | 1.00E-112 | Tetratricopeptide repeat (TPR)-like superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000193 | 1406339 | 1416991 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX006557
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF13041.5 | PPR_2 | 69 | 118 | 3.20E-07 |
| PF01535.19 | PPR | 146 | 167 | 0.091 |
| PF01535.19 | PPR | 174 | 202 | 0.00061 |
| PF01535.19 | PPR | 206 | 227 | 0.028 |
| PF13041.5 | PPR_2 | 239 | 283 | 6.40E-09 |
| PF13041.5 | PPR_2 | 337 | 384 | 8.10E-11 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 9.160 |
| SRR2545915 | Juvenile tuber | 6.650 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 8.010 |
| SRR5643514 | five period of Gastrodia elata | 9.480 | |
| SRR5643515 | five period of Gastrodia elata | 9.150 | |
| SRR5643524 | five period of Gastrodia elata | 9.240 | |
| SRR5643525 | five period of Gastrodia elata | 14.730 | |
| SRR5643528 | five period of Gastrodia elata | 14.370 | |
| SRR5643658 | five period of Gastrodia elata | 16.980 | |
| SRR5643659 | five period of Gastrodia elata | 11.680 | |
| SRR5643660 | five period of Gastrodia elata | 14.360 | |
| SRR5643661 | five period of Gastrodia elata | 10.650 | |
| SRR5643662 | five period of Gastrodia elata | 10.490 | |
| SRR5643663 | five period of Gastrodia elata | 13.380 | |
| SRR5643664 | five period of Gastrodia elata | 11.220 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 13.880 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 6.860 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 11.990 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 16.570 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 15.210 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 16.460 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 11.620 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 15.190 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 8.460 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 9.420 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 7.360 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 7.360 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 23.59 |
| Juven | Juvenile tuber | 24.55 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 23.14 | |
| Mother_Juven | Mother tuber of Juvenile | 24.63 |