Gene detail

Detail information of GWHGAAEX006560/evm.TU.scaffold_186.59

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG2162	Nonsense-mediated mRNA decay protein
nr	gi\|672130579\|ref\|XP_008788823.1\|	PREDICTED: protein SMG7-like isoform X1 [Phoenix dactylifera]
Swissprot	tr\|A9QM73\|SMG7_ARATH	Protein SMG7
trEMBL	tr\|M0TI90\|M0TI90_MUSAM	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr7P17030_001}
TAIR	AT5G19400	Telomerase activating protein Est1

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000193	1508328	1522343	+

Transcript Sequence
>GWHTAAEX006560 GAACGCTTCAAATTCTCATTTGCGGCATAGGGCCTATTGCGCACCTTTCGGAACATAGCGCGTGAAAATATCAAAAACTGAAAATAAAAAAAATTAGATCGGCCATTCTTTGACGGCAAGAGACGCCGGGCCCTTTGAAGGCCTTGTTTTTTTCTTCTCCTCTCCTTCCCTTCTCCCGCACCCATCCTTTCTTGGCAGGATCTTGAATTCGAGCGATCGCACTGAGAAGAGAGGTGTTCAAGTTGCATGTTTGATGGATGATGACTGTTCCAATGGATAGCTCATCTACTACCTCTTCATGGGACCATGCACAGGATCTTTTTAAGAAGAATATTGAATTGGAAAATGGCCTGCGGAAGTCTGCACAAGCAAAAATTCCATCAGATCCTAATGTGTGGCTCCAAATGCGTGAAAATTATGAAGCCATTATTCTTGAAGATCATGAGTTTTCAGAAAAATACGAGGTAGAGTATATGCTCTGGCAATTGCACTACAGGAGAATTGAGGAGTTCAGATTGCACATCAATGCTGCTAAGTCCGCAGGATTAACTGCAACCCAAAGTGGACGGAGCCCAACAAGACCTGATCGTATTAAGAAAATTCGATCTGCTTTTAAAAGCTTTCTTTCAGAATCAACTGGATTTTACCATGATTTGATACTTAAAATCCGGGCAAAATATGGATTACCTTTGGGATACTTTTCCGAGGGTCCTGAGAGCCAAATTATTCTATCAAAGGATGAGAAAAAATCATCTGAGATGAAGAAAGGGCTATTGTCTTGTCATCGCTGTTTAATTTATCTTGGGGATCTCGCTAGGTACAAGGGCATGTATGGAGAGGGAGACTCTGCTATTCATGAATTTACAGCTGCTTCTAGTTACTATATGCAGGCTGCTTCGCTTTGCCCTTCAAGTGGCAATCCACATCATCAGCTTGCTATTTTGGCATCATACGCAAATGATGACTTGGTTACCATATACCGGTATTTTCGGAGTTTGGCTGTGGATAACCCTTTTTCAACTGCGCGGGACAATCTAATTATTGCATTTGAGAAGAACCGCCAAAGAATAGCACAGATTCCTGCTGTTAAAACTGCCGCATCAAATGTGCTGCCTCCACGGGTGACTGGCAAGGGCCGAGGGCGAGGTGATGGAAGGATTACTGGAAAGGAATGCAACATCGAGCCTCCAATCAAAGAGCAGGAACTCGCCACCACGCTTGACATATATAAGTCCTTCTCTACTCGTTTTGTCAGACTCCATGGAATTCTGTTCACCCGCACCAGCCTGGAAACCTTCGAAGATGTGTTTTCGTCGGTGACTACTGATCTACACAAACTTTTAGCTGCTGGGGTGGAGGAAGCGTTTAACTTCGGTGTCGATGCTGCTGAAAATGGTCTGATCATTGTGAGGCTTGTGTCCATACTCATATTCACAGTACATAATGTGAATAATAGGGATGCCGGAGGTCAGTCCTATGCTGAGATCCTACAGCGGTCGGCACTGCTTCAGAATGCCTTCACAGCTTGCTTCGAGTTTGTCGGGCATATGCTCAAGAGGTGTGCTGAGCTGCGTGATGTTTCGTCGAGCTTCCTCTTGCCAGGAATTATGGTCTTTGTTGAATGGCTGGCATGCTACCCTGATATTGCTACTGGATTCGATGTGAAGGAGAAGCAAGCTGCAGCTCGGATGTTTTTCTGGGATCAGTGCGTGTCTTTCATGAACGCTCTGCTATTGAGCGGGCACGGCTACGCTGATGCCTATGAGGATGAAACATGTTTTTCTGACATGGGTTATTACGAGGAAGGAGAGACGGGGAACAGGCTCGCACTGTGGGAGGATTTCGAGCTGAGAGGATTTGTACCTCTAGTGCGTGCACATCTCATCTTGGACTTTTCAAGGAAGCATTCAATGGGCAGTAATGATGGATCAAGTAAGGAAGTGAGGGCTCGAGTCCAGAGAATTTTTGCTGCCGGGAGGGCATTGATAAATGTTATCAGAATTGATCAGCAAGGAATATACTTCGACCGGGTTAGAAGAAAGTTCGTCTTCGGCATCGAGTCTCTTCCATTCTCTGCTCGCGAAGTGCACTCTTGTTCAACTGAAAACATGAACAATTTTGTAGAGGGGTTGCAGTTGACTGCGGATGATTTTGGATTAGCTCCCGCAAAATCATTCTTGCACGCAGACGATGAGGAAGAAGAAGAGATTGTTTTCAAGCCGACAGCGGTCAGTGTTGTTGTCCCGACACCCGTTAATGTTGCTGTTCAGCTGACAAATGGTCTGAATGCTTCCGTTTGGCCACGAAGCTCAGCCGCTGTCATTTCTCCGCCCCTCCCGCCTTTTCTGGGCCTGAATATCAATGCACCATCGATATGGCCTTTGGAGAATGAAGCTGTTTTATCTGAAGGGTTGAGGAGCATGAACATCGAGAATGGTTTTGGTTCGAGTGCTCTTCATTCTGCCGGCGGTTTTCTCTCCACCGATCGAATAAATGCTGCTGCTGATACCGTTATACCATCCCCGCTCGATTCCATTGTGATGCCTGCCGCTGCGCTAACCACTGGCCTGCCTGCGACAGCCTCGTTGAATCCTCCTATTACGTCCAAGAGAAATCCCGTGAGCCGACCAATCAGGCACGTCGGCCCTCCTCCCGGGTTTGGCCACACATCCTCCAATAAGCCGCAGCTTGACTCCGGCCATTACAGCCTCGACGTGACGAACGAGCAGATTCATGATGATGACTATAGCTGGCTGGATGATTATCAGCCGTCCTCGAACAAGGAGATGACGGGGATGACCTCTGCGAGCCGTGCTTTGGTGCCCTCTCTCGCCGACTGCAATGGCGTCGCAGGCTTTCCGTTTCCCGGAAAGCAAACCCGTCCAACGATGATGATAATGCCGAGCGAGAACAAGTGGCAGGATTTCCGTCTTTTTGAGCATCATCTGAAGCCGTTTTCTGAGGAGCGGATTGCCCCTCGCGCGAATTTCCGACCCCCCGAAATGCTGCCGGAGCAGCTTCTTCAGGCACAGCAGCAGCCCACGTGGTCTGCCAGGCCTTACTTCGTGTGAGACTGTTCACGTGGTGACGATGAAAGGCTGGGAAGCAGAGACGAACCTCTGCTGGCTGTGTGGGGAACTTGTGAAGAAGGCATGAATTGTTCTCCGATGCTGTCAAGTTTTTATAATGTTTTGTTAAAAAAAAGGTGGGTTTCTGTTGGAGAATGAATTTAGATATGGCTGGTGCTTGCTGCCCTGCATCTCTGGTTGTTGTGTGCCCAAGGCTTAAGCGGATTGATTGCTGTTGGGGGATGGATGATTGCGGAGATCAGTTAGAAATTTATATAGGAGGAATATAATTTGCTTTGAAATAATACCCGGTGCTAGAAGGGATAAATCATCTTTTTTTAGGGTTTTGGATTTTTTTTCGAGGAAAATTACGGGACTGCCACTGCCTAGAGTTGCTGATACAAACACTGAGCTGCAGTGTATGTTCTGGTATAATGGAGATGGAGGGGGCGGCACAGGGAAGAAAGAATACCGTCATCAGTCCATCTCTTCTTTTATGTAGCAGTATTTCTTCACTCTTGATAATAATCTTTGTGCTCTTTTGCTGCAATGGGATTTCGAAAAAAGGCTATGAGAGAGACCTTAAAAAGTACTCTTTTTTTTTTTTTTTTTTT

Network for GWHGAAEX006560

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF10374.8	EST1	70	192	1.40E-19
PF10373.8	EST1_DNA_bind	205	540	2.70E-69

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K14409	SMG7, EST1C	mRNA surveillance pathway	map03015

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	183.920
SRP064423	SRR2545915	Juvenile tuber	116.640
SRP108465	SRR5643513	five period of Gastrodia elata	92.750
	SRR5643514	five period of Gastrodia elata	71.920
	SRR5643515	five period of Gastrodia elata	104.840
	SRR5643524	five period of Gastrodia elata	77.180
	SRR5643525	five period of Gastrodia elata	156.920
	SRR5643528	five period of Gastrodia elata	165.490
	SRR5643658	five period of Gastrodia elata	136.780
	SRR5643659	five period of Gastrodia elata	117.820
	SRR5643660	five period of Gastrodia elata	136.260
	SRR5643661	five period of Gastrodia elata	121.090
	SRR5643662	five period of Gastrodia elata	159.810
	SRR5643663	five period of Gastrodia elata	133.320
	SRR5643664	five period of Gastrodia elata	157.320
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	179.990
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	109.560
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	104.340
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	239.390
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	195.970
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	237.980
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	188.660
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	156.620
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	88.870
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	114.380
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	72.950
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	72.950
SRP279888	Gastro	Gastrodia elata tuber	98.77
	Juven	Juvenile tuber	170.26
	Mother_Gastro	Mother tuber of Gastrodia elata	167.57
	Mother_Juven	Mother tuber of Juvenile	385.23