Detail information of GWHGAAEX006561/evm.TU.scaffold_186.60
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|408674493|ref|YP_006874241.1| | 1.00E-36 | Formamidopyrimidine-DNA glycosylase catalytic domain protein [Emticicia oligotrophica DSM 17448] |
| nr | gi|357455291|ref|XP_003597926.1| | 3.87E-180 | Formamidopyrimidine-DNA glycosylase [Medicago truncatula] |
| Swissprot | tr|O80358|FPG_ARATH | 2.00E-148 | Formamidopyrimidine-DNA glycosylase |
| trEMBL | tr|A0A061G9S4|A0A061G9S4_THECC | 1.00E-162 | MUTM-1 isoform 1 {ECO:0000313|EMBL:EOY25907.1} |
| TAIR | AT1G52500 | 1.00E-147 | MUTM homolog-1 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000193 | 1522728 | 1552010 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX006561
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module8 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01149.23 | Fapy_DNA_glyco | 1 | 131 | 4.30E-30 |
| PF06831.13 | H2TH | 146 | 232 | 1.40E-29 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K10563 | mutM, fpg | Base excision repair | map03410 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006281 | Biological Process | DNA repair |
| GO:0006284 | Biological Process | base-excision repair |
| GO:0006289 | Biological Process | nucleotide-excision repair |
| GO:0003676 | Molecular Function | nucleic acid binding |
| GO:0003906 | Molecular Function | DNA-(apurinic or apyrimidinic site) lyase activity |
| GO:0008270 | Molecular Function | zinc ion binding |
| GO:0016799 | Molecular Function | hydrolase activity, hydrolyzing N-glycosyl compounds |
| GO:0008534 | Molecular Function | oxidized purine nucleobase lesion DNA N-glycosylase activity |
| GO:0003684 | Molecular Function | damaged DNA binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 132.330 |
| SRR2545915 | Juvenile tuber | 158.990 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 43.660 |
| SRR5643514 | five period of Gastrodia elata | 44.730 | |
| SRR5643515 | five period of Gastrodia elata | 38.810 | |
| SRR5643524 | five period of Gastrodia elata | 34.200 | |
| SRR5643525 | five period of Gastrodia elata | 31.130 | |
| SRR5643528 | five period of Gastrodia elata | 16.530 | |
| SRR5643658 | five period of Gastrodia elata | 24.370 | |
| SRR5643659 | five period of Gastrodia elata | 60.870 | |
| SRR5643660 | five period of Gastrodia elata | 75.290 | |
| SRR5643661 | five period of Gastrodia elata | 56.660 | |
| SRR5643662 | five period of Gastrodia elata | 72.380 | |
| SRR5643663 | five period of Gastrodia elata | 70.590 | |
| SRR5643664 | five period of Gastrodia elata | 79.220 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 65.480 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 84.210 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 57.900 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 78.960 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 61.010 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 63.590 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 66.910 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 64.090 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 40.890 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 48.680 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 38.550 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 38.550 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 68.12 |
| Juven | Juvenile tuber | 43.28 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 8.00 | |
| Mother_Juven | Mother tuber of Juvenile | 16.90 |