Detail information of GWHGAAEX006569/evm.TU.scaffold_187.5
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|357419910|ref|YP_004932902.1| | 3.00E-22 | HhH-GPD family protein [Thermovirga lienii DSM 17291] |
| nr | gi|296090400|emb|CBI40219.3| | 0 | unnamed protein product [Vitis vinifera] |
| Swissprot | tr|Q8LK56|DME_ARATH | 0 | Transcriptional activator DEMETER |
| trEMBL | tr|J3MVU3|J3MVU3_ORYBR | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:OB09G11210.1} |
| trEMBL | tr|J3MVU3|J3MVU3_ORYBR | 8.00E-29 | Uncharacterized protein {ECO:0000313|EnsemblPlants:OB09G11210.1} |
| TAIR | AT3G10010 | 1.00E-143 | demeter-like 2 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000184 | 140881 | 159809 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX006569
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00730.24 | HhH-GPD | 797 | 913 | 4.60E-05 |
| PF15629.5 | Perm-CXXC | 1167 | 1196 | 4.70E-07 |
| PF15628.5 | RRM_DME | 1199 | 1300 | 1.50E-49 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006281 | Biological Process | DNA repair |
| GO:0006284 | Biological Process | base-excision repair |
| GO:0051539 | Molecular Function | 4 iron, 4 sulfur cluster binding |
| GO:0003824 | Molecular Function | catalytic activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 15.230 |
| SRR2545915 | Juvenile tuber | 21.880 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 11.240 |
| SRR5643514 | five period of Gastrodia elata | 12.120 | |
| SRR5643515 | five period of Gastrodia elata | 10.040 | |
| SRR5643524 | five period of Gastrodia elata | 11.500 | |
| SRR5643525 | five period of Gastrodia elata | 6.180 | |
| SRR5643528 | five period of Gastrodia elata | 4.650 | |
| SRR5643658 | five period of Gastrodia elata | 7.070 | |
| SRR5643659 | five period of Gastrodia elata | 9.590 | |
| SRR5643660 | five period of Gastrodia elata | 9.110 | |
| SRR5643661 | five period of Gastrodia elata | 8.840 | |
| SRR5643662 | five period of Gastrodia elata | 6.920 | |
| SRR5643663 | five period of Gastrodia elata | 7.410 | |
| SRR5643664 | five period of Gastrodia elata | 6.830 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 9.130 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 11.600 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 10.140 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 8.550 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 5.840 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 5.650 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 7.890 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 8.390 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 10.100 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 7.610 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 8.690 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 8.690 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 5.84 |
| Juven | Juvenile tuber | 9.90 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 4.43 | |
| Mother_Juven | Mother tuber of Juvenile | 7.45 |