Gene detail

Detail information of GWHGAAEX006572/evm.TU.scaffold_187.8

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG1303	Amino acid transporters
nr	gi\|672199634\|ref\|XP_008777663.1\|	PREDICTED: lysine histidine transporter-like 8 [Phoenix dactylifera]
Swissprot	tr\|Q9SX98\|LHTL8_ARATH	Lysine histidine transporter-like 8
trEMBL	tr\|M0SJ93\|M0SJ93_MUSAM	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr3P30790_001}
TAIR	AT1G47670	Transmembrane amino acid transporter family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000184	195933	198871	-

Transcript Sequence
>GWHTAAEX006572 TTCTTCTTCTTCTTCTTCTGCTTCACAGTAGGTTGGAATGGAGGAGAGGGGAGCGGAACCGGAGCTGGTGTCGATTCCGGCAACCCCAAAAAGCTTATCAACTTCTGAGACGTCCGCAACGCCGACGGGAACGATGACATGGGCCAGGGCGAAGGCTTCCTGGACCCCGACGGGAGCTTTATCGGGAATGGCGACGCCTCGGCTGTTCAGCCCTAGCGGGCCCATGGGAACTCCAATGAGGAAGATGGTCGTGAGCCTTCGAGGGTATCTCGAAGAAGTCGGCCATCTCACTCGCCTCAACCCTCAGGACGCGTGGCTTCCCATCACCGAGTCCCGCAATGGCAATGCCCATTACGCAGCTTTCCACAACCTCAATGCTGGAATCGGCTTCCAGGCTCTTATTCTCCCCGTCGCCTTCGCCTTCCTTGGCTGGAGTTGGGGGATAGTATCTCTGACGATAGCCTATCTCTGGCAGCTCTACACTCTCTGGATACTTGTGAACCTTCATGAAGCAGTCCCTGGCAGGCGTTACAATAGATACGTTGAGCTTGCCCAGGCTGCCTTTGGGGAAAGGCTGGGCCTATGGTTGGCGTTGTTCCCGACAGTGTACCTATCCGCCGGGACGGCAACGGCGTTGATCCTCATTGGCGGAGAAACCATGAAGCTCTTCTTCCAGATCGTCTGTGGATCGCTCTGTTCCTCAAATCCGCTGACGACAGTGGAGTGGTACCTGGTCTTCACTTTCCTGTGCATCGTCCTCTCCCAGCTGCCAAACCTCAACTCCATCGCCGGCCTCTCTCTCGTTGGCGCAGTGACGGCAGTGATATACACGACGGTGGCGTGGGTGCTTTCCGTCAGCCAGGCGAGGCCCGGCTCAGTGACCTACGAACCCCTCCGATCCAAATCCCCGACCACGTCGTGCTTCTCGGTGCTGAATTCGTTGGGCATCATTGCCTTTGCCTTCAGAGGGCATAATCTGGCCCTGGAGATTCAGGCGACCATGCCGTCGACCTTTAAGCACCCGGCTCACGTGCCAATGTGGAGGGGAGCCAAAGTTGCCTATCTCCTCATCGCCATGTGCCTGTTCCCCGTCGCCATTGGAGGCTTCTGGGCTTACGGCAACCTCATGCCGGCAGGGGGGATGCTGAATGCGCTGTACGGCTTTCACGGACGCGATATTCCGAGGGCGCTGCTCGCGACGGCATTCCTCCTGGTGGTGTTCAGCTGCCTCAGCAGCTTCCAGATATATTCAATGCCCGTTTTCGACAGCTTCGAGGCGGGGTACACGGGCCGTACGAACCGGCCGTGTTCGGCGTGGGTGCGGTCCGGTTTCCGTGTGTTCTACGGGTTCATTTCGTTCTTCGTCGGGGTGGCGTTCCCGTTTCTTTCGAGCATCGCCGGCCTTCTGGGCGGCCTCACTCTCCCGGTGACCTTCGCCTACCCCTGCTTCATGTGGGTTCTCATAAGGAAGCCTCGGAGGTTCAGCCTGAGCTGGTGCCTGAACTGTGGTTTGGGGGTGCTTGGAATAGGGTTCAGCCTGGCGTTCTCGGCTGGCGGTGTGTGGAGCATGGTCAACAGCGGGCCCAGGCTCAAGTTTTTTAAGCCCAGCTGATGCGGGCAGAAAGAAAGATAGAGTTCTCACAGCCCACCCACTGCCTTTTTTATTTTGCAAGTATGTCTCATCCGTGCCACTTTTTTTTTTTTTTAATATTAGTGTTTCCTTTTAAAAGTAATTAGAGTAAAGCTCGTTAATCTTTTCCAAGCTGTGGCGAGCAATTCAATTTGTTAATCTTTCCCAAAGATTGTCCTTTGTCATGGGTGGTATGTGGAATTATCGGCGTTTGACATCCTCAAGAACTTAAATTTCCCTTGATTGATAGTATTTATTTTATTTTATAAATAGCTAAG

Network for GWHGAAEX006572

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module2

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01490.17	Aa_trans	101	511	1.10E-54

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	1.130
SRP064423	SRR2545915	Juvenile tuber	1.630
SRP108465	SRR5643513	five period of Gastrodia elata	2.490
	SRR5643514	five period of Gastrodia elata	3.220
	SRR5643515	five period of Gastrodia elata	2.630
	SRR5643524	five period of Gastrodia elata	3.070
	SRR5643525	five period of Gastrodia elata	3.990
	SRR5643528	five period of Gastrodia elata	5.450
	SRR5643658	five period of Gastrodia elata	2.680
	SRR5643659	five period of Gastrodia elata	0.990
	SRR5643660	five period of Gastrodia elata	0.740
	SRR5643661	five period of Gastrodia elata	1.360
	SRR5643662	five period of Gastrodia elata	1.590
	SRR5643663	five period of Gastrodia elata	2.100
	SRR5643664	five period of Gastrodia elata	1.990
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	5.410
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	4.760
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	6.250
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	6.260
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	6.010
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	6.190
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	6.640
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	5.690
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	10.270
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	7.010
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	6.940
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	6.940
SRP279888	Gastro	Gastrodia elata tuber	3.11
	Juven	Juvenile tuber	2.55
	Mother_Gastro	Mother tuber of Gastrodia elata	4.94
	Mother_Juven	Mother tuber of Juvenile	1.91