Gene detail

Detail information of GWHGAAEX006573/evm.TU.scaffold_187.9

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|743856463\|ref\|XP_010941868.1\|	7.48E-164	PREDICTED: nuclear pore complex protein NUP58 [Elaeis guineensis]
Swissprot	tr\|Q8RWH9\|NUP58_ARATH	4.00E-141	Nuclear pore complex protein NUP58 {ECO:0000303\|PubMed:21189294}
trEMBL	tr\|M0SU08\|M0SU08_MUSAM	7.00E-162	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr4P32460_001}
TAIR	AT4G37130	3.00E-131	hydroxyproline-rich glycoprotein family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000184	199909	226818	-

Transcript Sequence
>GWHTAAEX006573 GGTGTGTATGAAGTTCTTCATAAAGAACTGCACATGAATCAGCATTGAAGACGATTTTTTAGCTCAGAGGTTCGAAGTTCAGATTTTCGAGGGTGAAGATGCGAGAAGTGGAATACTGAAAGTTCCCAAGTCCTAATTTCAAATTCAAATCAATCAATGGCATTCTCTTTCGCGTCTCCTTCTCCGCTATTCCAAGGCTCACAAGCCCTAATTCCAAGTTCAGCACCCGTTCCTTCGTCTTTCTTCACACAGAGCACGCAGGCACCCTCCTTCGCACAACCCCAGCTGCAACTTCAGCCGCAGCCGCAGTCTCTGCCGCAGATGTACCTCTTTACGGCCGACAGAACACCGGCCAGCTACAGCACAAAATTCGAGGATCTCCATCCTGATTCTCAGAAGTTTCTCCTTCAAATCGAAGAACGGATATTGGAATACAAGGATGAAAGCCAAAGGCTAGAACAAAATAGTCGCCTTTATGGTTTGTCGATGCCAAATGATAGTTTTGAAGTTGATGCTAGCCATATATTACAGGAACTCGGAGGAATCAGTGCTTCAATGGACAGGGAAAAGTTTATAGGGCAAGAGCTAATGAGTGAAGTGAAAAGCATGATGTGGAACACAGAAGTAGCTGTGCGCTCATACATGATATTACGGCCAAGATTTGTTCGATCAAATGCCTCAAGTAATTCTGATGGCACCCCTTCAAGTAATGCTGTGGCAGGTCCTCTGAGTTCTAGCCCCAGCAATCAACTGACAAACAGTTCCATGATGCCCTTCTACGATTTCTATAGCGGGTTCCCAAAGAGGCCTTCTCCATTTCTGCAGTTCTCGCTTTCTCGGTTTGAGAAGTATCTTGCTGAGTACCGTCAGTGGGTTGAAGAATTGGAGCAGCTTCTACTTCTTGATGGTGATAAGAGCGCTCTGAACTCAGGGTTGTCAACTCTACAATCTCTTCCCAAAATTGTGTCAAATGTTCATGATTTTTTTGTTCATACTGCTGCCAAGGTAGAAAGCCTCCATCAATATGTTGAGTCAATGAAAACAGTTTATCTTACTGCTCAGCGACGTCATGGTGAAGGCAATGATCCTTTTCTTGAAGCTGACAGACGAGAAACTGCTAAACAGCAAGCTGCTGCTAAAAGAGTTCATCCAACCTTGCACTTGCCTGCTGTTCCTGAACAAATATCAGCTTATGGTACGGGTTTGCACACTAGTTCAGGGATTAATGTATCAAGTGCTCCACAGCCAGTAGGCAACTTGAGTTCTTCTGGTAGTGGATTTTCACTATTTGGTACTCCAAGTTCTACTCCGACTGCTACAACGTCGTCATTTCTCTTCCCCAACCCTACCATGTCTGCTCCAACTTCCAGCCTTTTTGGTTCGACTGGATTTTCACAGCAATCATCAAATTTTGGTAATACATCCACATCTATTTTTGGCTCTACTCAGATGCCATCTCTCTTTGGAGCTAGTTCATCATCCTTGTCATCTAATCCAGCTGTCGGAAGTTCCAACCTATTTGCAGCACCTCAGCTTACACTGGGTGCTCCAGCTGCTTCTGGGGCCAGCTTCGGTGCAACATCTAAATCTGCTAGGCCCAAGTCTCGTGCCACAAGACGGTGAGCTGCTTGAATTTATTCTGAACAGCTTCCCCAAATCGAGAGCCTGATGCAAGCCCACGGCATGATCGTCGAGAGTGCTTTGTTCGCCCGGGTTCGTCCGCTCCGCCGAACTCGCCTAATTTAAAATTAAGAGTCTTTCGTGTCCGTTTGAGGAAGATGATGAGAGCAGGTGGCAGGCTGATTATTGTTCTTTTTTGTCTTAGCAGATGTGGTCAGTCATATTGATTGTGTTTCATATCATTTGATTGTTCATCTATTTTAATGCTGAAATTCTGCTTAGGCTCTAAGCTCTGATGATAATTTGGCTGGATGAATTTAAGCCTTTGGATCTATCTGCTTTAAGATCAGTGCAGTACATTATTTACATATTAGCCCTTCTACGCTTCCTAAATAATAGCCCAAAATGTGCGAAAAACAAATTGTGATCGTTGGATAGGAACTGTGGGGTAGGATTGTAAATTTTGCCAAATCTTAACTTCAAATTTGTTCAGTGGTATTATGCTATTTTATAGTCAGATGAACGTTCCCTCATTCAAAGGGTGTTCATGTGGGCTAATGATGGTTTTTCTTAAAAGGGAAATTTGTTACTTGCATATTCAGCCATTCAAATTTGCATATTTACAAATTAATCCAAATCTCAGTAGTTACATTGATACGGC

Network for GWHGAAEX006573

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF15967.4	Nucleoporin_FG2	218	476	1.30E-11

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K14307	NUPL1, NUP49	RNA transport	map03013

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	26.720
SRP064423	SRR2545915	Juvenile tuber	29.790
SRP108465	SRR5643513	five period of Gastrodia elata	16.770
	SRR5643514	five period of Gastrodia elata	18.820
	SRR5643515	five period of Gastrodia elata	17.250
	SRR5643524	five period of Gastrodia elata	17.530
	SRR5643525	five period of Gastrodia elata	16.770
	SRR5643528	five period of Gastrodia elata	16.560
	SRR5643658	five period of Gastrodia elata	20.130
	SRR5643659	five period of Gastrodia elata	26.330
	SRR5643660	five period of Gastrodia elata	28.080
	SRR5643661	five period of Gastrodia elata	27.050
	SRR5643662	five period of Gastrodia elata	28.550
	SRR5643663	five period of Gastrodia elata	24.610
	SRR5643664	five period of Gastrodia elata	27.420
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	26.160
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	26.220
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	22.350
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	26.100
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	22.600
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	26.410
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	22.590
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	21.020
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	21.740
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	20.190
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	24.960
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	24.960
SRP279888	Gastro	Gastrodia elata tuber	22.07
	Juven	Juvenile tuber	20.98
	Mother_Gastro	Mother tuber of Gastrodia elata	16.48
	Mother_Juven	Mother tuber of Juvenile	17.25