Detail information of GWHGAAEX006575/evm.TU.scaffold_187.11


Functional Annotation

DatabaseOrthologsE valueAnnotation
nrgi|672191750|ref|XP_008775585.1|8.52E-113PREDICTED: pentatricopeptide repeat-containing protein At4g18975, chloroplastic [Phoenix dactylifera]
Swissprottr|Q2V3H0|PP322_ARATH2.00E-94Pentatricopeptide repeat-containing protein At4g18975, chloroplastic (Precursor)
trEMBLtr|D7TJV2|D7TJV2_VITVI5.00E-111Putative uncharacterized protein {ECO:0000313|EMBL:CBI30774.3}
TAIRAT4G18970_14.00E-89Unannotated protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000184269743274149-
Transcript Sequence

Network for GWHGAAEX006575

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module8

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
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Gene Ontology

GO term OntologyName
GO:0005515Molecular Functionprotein binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms25.140
SRR2545915Juvenile tuber24.350
SRP108465SRR5643513five period of Gastrodia elata9.670
SRR5643514five period of Gastrodia elata7.930
SRR5643515five period of Gastrodia elata6.080
SRR5643524five period of Gastrodia elata6.720
SRR5643525five period of Gastrodia elata4.590
SRR5643528five period of Gastrodia elata4.340
SRR5643658five period of Gastrodia elata4.670
SRR5643659five period of Gastrodia elata10.840
SRR5643660five period of Gastrodia elata10.250
SRR5643661five period of Gastrodia elata11.050
SRR5643662five period of Gastrodia elata13.480
SRR5643663five period of Gastrodia elata10.870
SRR5643664five period of Gastrodia elata11.420
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_17.150
SRR6049655Rhizomagastrodiae_C368-T10_good_112.420
SRR6049656Rhizomagastrodiae_C368-T07_good_18.050
SRR6049657Rhizomagastrodiae_C368-T07_good_19.080
SRR6049658Rhizomagastrodiae_C368-T04_good_15.890
SRR6049659Rhizomagastrodiae_C368-T04_good_17.100
SRR6049660Rhizomagastrodiae_C368-T01_good_15.880
SRR6049661Rhizomagastrodiae_C368-T04_good_16.590
SRR6049662Rhizomagastrodiae_C368-T01_good_16.100
SRR6049663Rhizomagastrodiae_C368-T01_good_14.040
SRR6049664Rhizomagastrodiae_C368-T10_good_18.290
SRR6049665Rhizomagastrodiae_C368-T10_good_18.290
SRP279888GastroGastrodia elata tuber 10.24
JuvenJuvenile tuber16.04
Mother_GastroMother tuber of Gastrodia elata 3.98
Mother_JuvenMother tuber of Juvenile 6.81