Detail information of GWHGAAEX006576/evm.TU.scaffold_187.12
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|113476788|ref|YP_722849.1| | 3.00E-46 | ATP-dependent DNA helicase RecQ [Trichodesmium erythraeum IMS101] |
| KOG | KOG0351 | 0 | ATP-dependent DNA helicase |
| nr | gi|743865417|ref|XP_010904824.1| | 0 | PREDICTED: ATP-dependent DNA helicase Q-like SIM isoform X2 [Elaeis guineensis] |
| Swissprot | tr|Q9FT69|RQSIM_ARATH | 0 | ATP-dependent DNA helicase Q-like SIM |
| trEMBL | tr|F6I4L4|F6I4L4_VITVI | 0 | Lysine--tRNA ligase {ECO:0000256|RuleBase:RU003748} |
| TAIR | AT5G27680 | 0 | RECQ helicase SIM |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000184 | 278015 | 367617 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX006576
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00270.28 | DEAD | 208 | 376 | 9.40E-19 |
| PF00271.30 | Helicase_C | 546 | 640 | 2.20E-15 |
| PF16124.4 | RecQ_Zn_bind | 650 | 713 | 2.70E-09 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006310 | Biological Process | DNA recombination |
| GO:0005524 | Molecular Function | ATP binding |
| GO:0004386 | Molecular Function | helicase activity |
| GO:0003676 | Molecular Function | nucleic acid binding |
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 13.940 |
| SRR2545915 | Juvenile tuber | 18.500 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 16.930 |
| SRR5643514 | five period of Gastrodia elata | 21.470 | |
| SRR5643515 | five period of Gastrodia elata | 19.300 | |
| SRR5643524 | five period of Gastrodia elata | 19.680 | |
| SRR5643525 | five period of Gastrodia elata | 16.640 | |
| SRR5643528 | five period of Gastrodia elata | 13.790 | |
| SRR5643658 | five period of Gastrodia elata | 16.530 | |
| SRR5643659 | five period of Gastrodia elata | 12.300 | |
| SRR5643660 | five period of Gastrodia elata | 11.630 | |
| SRR5643661 | five period of Gastrodia elata | 12.960 | |
| SRR5643662 | five period of Gastrodia elata | 12.920 | |
| SRR5643663 | five period of Gastrodia elata | 13.050 | |
| SRR5643664 | five period of Gastrodia elata | 12.490 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 16.320 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 14.380 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 18.240 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 14.570 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 18.070 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 20.050 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 17.980 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 18.330 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 17.070 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 18.470 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 20.400 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 20.400 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 22.94 |
| Juven | Juvenile tuber | 14.10 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 16.32 | |
| Mother_Juven | Mother tuber of Juvenile | 11.74 |