Detail information of GWHGAAEX006578/evm.TU.scaffold_187.16
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 2.00E-55 | FOG: PPR repeat |
| nr | gi|672166343|ref|XP_008803100.1| | 0 | PREDICTED: pentatricopeptide repeat-containing protein At1g63400-like [Phoenix dactylifera] |
| Swissprot | tr|Q3EDF8|PPR28_ARATH | 6.00E-56 | Pentatricopeptide repeat-containing protein At1g09900 |
| trEMBL | tr|M0TLX2|M0TLX2_MUSAM | 3.00E-165 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr8P02200_001} |
| TAIR | AT1G09900 | 2.00E-55 | Pentatricopeptide repeat (PPR-like) superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000184 | 425710 | 440353 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX006578
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01535.19 | PPR | 102 | 131 | 2.90E-05 |
| PF13041.5 | PPR_2 | 133 | 178 | 3.60E-10 |
| PF12854.6 | PPR_1 | 201 | 225 | 5.10E-09 |
| PF13041.5 | PPR_2 | 240 | 288 | 2.20E-12 |
| PF13041.5 | PPR_2 | 309 | 358 | 2.60E-12 |
| PF13041.5 | PPR_2 | 379 | 427 | 6.60E-12 |
| PF13041.5 | PPR_2 | 447 | 495 | 2.80E-14 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 2.300 |
| SRR2545915 | Juvenile tuber | 3.250 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 2.110 |
| SRR5643514 | five period of Gastrodia elata | 1.940 | |
| SRR5643515 | five period of Gastrodia elata | 2.820 | |
| SRR5643524 | five period of Gastrodia elata | 1.820 | |
| SRR5643525 | five period of Gastrodia elata | 1.940 | |
| SRR5643528 | five period of Gastrodia elata | 2.260 | |
| SRR5643658 | five period of Gastrodia elata | 2.550 | |
| SRR5643659 | five period of Gastrodia elata | 3.440 | |
| SRR5643660 | five period of Gastrodia elata | 2.740 | |
| SRR5643661 | five period of Gastrodia elata | 2.700 | |
| SRR5643662 | five period of Gastrodia elata | 3.290 | |
| SRR5643663 | five period of Gastrodia elata | 3.790 | |
| SRR5643664 | five period of Gastrodia elata | 3.340 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 1.840 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 2.570 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 2.480 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 2.320 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 1.200 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 1.750 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 1.880 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 2.390 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 2.490 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 2.370 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 2.270 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 2.270 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 2.82 |
| Juven | Juvenile tuber | 2.19 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 1.57 | |
| Mother_Juven | Mother tuber of Juvenile | 1.09 |