Detail information of GWHGAAEX006579/evm.TU.scaffold_187.17


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG30311.00E-126Protein required for biogenesis of the ribosomal 60S subunit
nrgi|743777462|ref|XP_010919164.1|0PREDICTED: ribosome production factor 2 homolog [Elaeis guineensis]
Swissprottr|Q9AWM9|RPF2_ORYSJ8.00E-162Ribosome production factor 2 homolog
trEMBLtr|M0T050|M0T050_MUSAM3.00E-173Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr5P20210_001}
TAIRAT3G236201.00E-126Ribosomal RNA processing Brix domain protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000184443779449890-
Transcript Sequence

Network for GWHGAAEX006579

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF04427.17Brix352319.90E-33
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
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Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms18.260
SRR2545915Juvenile tuber35.630
SRP108465SRR5643513five period of Gastrodia elata12.670
SRR5643514five period of Gastrodia elata11.460
SRR5643515five period of Gastrodia elata11.670
SRR5643524five period of Gastrodia elata10.750
SRR5643525five period of Gastrodia elata7.530
SRR5643528five period of Gastrodia elata7.310
SRR5643658five period of Gastrodia elata5.950
SRR5643659five period of Gastrodia elata25.330
SRR5643660five period of Gastrodia elata23.210
SRR5643661five period of Gastrodia elata25.290
SRR5643662five period of Gastrodia elata28.170
SRR5643663five period of Gastrodia elata27.480
SRR5643664five period of Gastrodia elata28.980
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_113.680
SRR6049655Rhizomagastrodiae_C368-T10_good_111.880
SRR6049656Rhizomagastrodiae_C368-T07_good_112.980
SRR6049657Rhizomagastrodiae_C368-T07_good_114.540
SRR6049658Rhizomagastrodiae_C368-T04_good_111.160
SRR6049659Rhizomagastrodiae_C368-T04_good_111.000
SRR6049660Rhizomagastrodiae_C368-T01_good_112.760
SRR6049661Rhizomagastrodiae_C368-T04_good_111.030
SRR6049662Rhizomagastrodiae_C368-T01_good_113.940
SRR6049663Rhizomagastrodiae_C368-T01_good_113.200
SRR6049664Rhizomagastrodiae_C368-T10_good_113.100
SRR6049665Rhizomagastrodiae_C368-T10_good_113.100
SRP279888GastroGastrodia elata tuber 17.78
JuvenJuvenile tuber17.74
Mother_GastroMother tuber of Gastrodia elata 8.19
Mother_JuvenMother tuber of Juvenile 12.20