Detail information of GWHGAAEX006584/evm.TU.scaffold_187.23
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|18312112|ref|NP_558779.1| | 8.00E-78 | flap endonuclease-1 [Pyrobaculum aerophilum str. IM2] |
| KOG | KOG2519 | 0 | 5'-3' exonuclease |
| nr | gi|743855502|ref|XP_010941453.1| | 0 | PREDICTED: flap endonuclease 1-A-like isoform X1 [Elaeis guineensis] |
| Swissprot | tr|B8AW67|FEN11_ORYSI | 0 | Flap endonuclease 1-A {ECO:0000255|HAMAP-Rule:MF_03140} |
| trEMBL | tr|J3M9A1|J3M9A1_ORYBR | 0 | Flap endonuclease 1 {ECO:0000256|HAMAP-Rule:MF_03140} |
| TAIR | AT5G26675 | 0 | Unannotated protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000184 | 558324 | 568242 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX006584
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00752.16 | XPG_N | 45 | 151 | 4.40E-30 |
| PF00867.17 | XPG_I | 191 | 278 | 2.50E-31 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K04799 | FEN1, RAD2 | DNA replication | map03030 |
| Base excision repair | map03410 | ||
| Non-homologous end-joining | map03450 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006281 | Biological Process | DNA repair |
| GO:0004518 | Molecular Function | nuclease activity |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003824 | Molecular Function | catalytic activity |
| GO:0016788 | Molecular Function | hydrolase activity, acting on ester bonds |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 60.300 |
| SRR2545915 | Juvenile tuber | 70.080 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 32.310 |
| SRR5643514 | five period of Gastrodia elata | 39.030 | |
| SRR5643515 | five period of Gastrodia elata | 32.410 | |
| SRR5643524 | five period of Gastrodia elata | 37.940 | |
| SRR5643525 | five period of Gastrodia elata | 18.270 | |
| SRR5643528 | five period of Gastrodia elata | 12.620 | |
| SRR5643658 | five period of Gastrodia elata | 11.540 | |
| SRR5643659 | five period of Gastrodia elata | 46.460 | |
| SRR5643660 | five period of Gastrodia elata | 54.970 | |
| SRR5643661 | five period of Gastrodia elata | 53.190 | |
| SRR5643662 | five period of Gastrodia elata | 50.020 | |
| SRR5643663 | five period of Gastrodia elata | 50.060 | |
| SRR5643664 | five period of Gastrodia elata | 51.770 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 43.370 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 44.590 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 44.000 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 47.430 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 45.310 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 48.970 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 45.500 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 40.400 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 47.730 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 46.450 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 44.420 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 44.420 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 68.59 |
| Juven | Juvenile tuber | 66.70 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 21.05 | |
| Mother_Juven | Mother tuber of Juvenile | 31.21 |