Detail information of GWHGAAEX006585/evm.TU.scaffold_187.24


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG19405.00E-135Zn-finger protein
nrgi|695035977|ref|XP_009405425.1|6.62E-147PREDICTED: RING finger and CHY zinc finger domain-containing protein 1-like [Musa acuminata subsp. malaccensis]
trEMBLtr|M5XEG9|M5XEG9_PRUPE3.00E-143Uncharacterized protein {ECO:0000313|EMBL:EMJ24329.1}
TAIRAT5G186505.00E-135CHY-type/CTCHY-type/RING-type Zinc finger protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000184570493593595-
Transcript Sequence

Network for GWHGAAEX006585

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module4

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF05495.11zf-CHY18951.00E-18
PF13639.5zf-RING_21491921.10E-08
PF14599.5zinc_ribbon_61972541.20E-25
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K10144RCHY1, PIRH2 Ubiquitin mediated proteolysis map04120
p53 signaling pathwaymap04115

Gene Ontology

GO term OntologyName
GO:0008270Molecular Functionzinc ion binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms31.760
SRR2545915Juvenile tuber36.280
SRP108465SRR5643513five period of Gastrodia elata31.560
SRR5643514five period of Gastrodia elata29.630
SRR5643515five period of Gastrodia elata29.730
SRR5643524five period of Gastrodia elata32.780
SRR5643525five period of Gastrodia elata26.940
SRR5643528five period of Gastrodia elata35.400
SRR5643658five period of Gastrodia elata33.530
SRR5643659five period of Gastrodia elata32.520
SRR5643660five period of Gastrodia elata33.720
SRR5643661five period of Gastrodia elata30.240
SRR5643662five period of Gastrodia elata26.940
SRR5643663five period of Gastrodia elata28.970
SRR5643664five period of Gastrodia elata29.550
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_123.650
SRR6049655Rhizomagastrodiae_C368-T10_good_124.450
SRR6049656Rhizomagastrodiae_C368-T07_good_126.060
SRR6049657Rhizomagastrodiae_C368-T07_good_126.630
SRR6049658Rhizomagastrodiae_C368-T04_good_123.680
SRR6049659Rhizomagastrodiae_C368-T04_good_129.150
SRR6049660Rhizomagastrodiae_C368-T01_good_125.690
SRR6049661Rhizomagastrodiae_C368-T04_good_124.460
SRR6049662Rhizomagastrodiae_C368-T01_good_124.770
SRR6049663Rhizomagastrodiae_C368-T01_good_127.680
SRR6049664Rhizomagastrodiae_C368-T10_good_131.490
SRR6049665Rhizomagastrodiae_C368-T10_good_131.490
SRP279888GastroGastrodia elata tuber 42.79
JuvenJuvenile tuber52.06
Mother_GastroMother tuber of Gastrodia elata 72.58
Mother_JuvenMother tuber of Juvenile 77.79