Gene detail

Detail information of GWHGAAEX006587/evm.TU.scaffold_187.26

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|385809651\|ref\|YP_005846047.1\|	2.00E-101	Long-chain acyl-CoA synthetase [Ignavibacterium album JCM 16511]
KOG	KOG1256	0	Long-chain acyl-CoA synthetases (AMP-forming)
nr	gi\|672126920\|ref\|XP_008786918.1\|	0	PREDICTED: long chain acyl-CoA synthetase 6, peroxisomal-like [Phoenix dactylifera]
Swissprot	tr\|Q8LKS5\|LACS7_ARATH	0	Long chain acyl-CoA synthetase 7, peroxisomal
trEMBL	tr\|D7T6V1\|D7T6V1_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI26222.3}
TAIR	AT5G27600	0	long-chain acyl-CoA synthetase 7

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000184	621581	698380	+

Transcript Sequence
>GWHTAAEX006587 ATGCGGCCCCAATTGAGCGCAAGTTCAACTTCAGGGGAGTTCGTTTATGAACAGCGTTATAGTGTTGTCCTTCCTGAGAAGCTGCAAACTGGGAAGTGGAACGTATACAGATCTGCACGGTCACCATTGAATTTGGTCTCTAGATATCCAGAGCACCCAAATGTTCGAACATTACATGATAATTTTGTGCATGCTGTTAACACATATCCTGACCACAAGTACTTAGGGACAAGAGTACGCCCTGATGGAACTGTTGGGGAGTACAAGTGGATGACTTATGGGGAAGCAGGTACATCCCGATCAGCAATAGGCTCTGGCCTATTATATCATGCGGTTCCCAAAGATTCATGCATCGGACTTTTTTTTACAAACAGGACAGAGTGGGTAATTGTAGACCATGCGTGCTCAGCCTACTCTTACGTATCAGTGCCTCTATATGATACTCTTGGCCCCGATGCTGTGAGCTATATTGTTAATCATGCTAATATACACGCTGTATTTTGTACACCACAAACATTGAGTAATTTATTAAGCTTTTTTGATAAGATTTCTTCGGTGCATCTGATAGTTGTAGTTGGCACTTTGGAAGAGAATATACATTCAGTTACTTCAGCAAATCAACCAACGATTATTACCTACTCTAAACTTTTGGAACAGGGCTATTGTAATCTGAAACCATTTTGTCCCCCAAATCCTGAAAATATTGCAACTATATGCTATACCAGTGGGACAACTGGCACACCGAAGGGTGTATTGCTATCCCATGAAAATTTGATCGCAAATACTGCTGGCTCTAGTTTGGGTTTCAGATTTTTTTCTTCTGACATTTATATTTCTTATCTTCCATTAGCACACATTTATGAGAGGGCCAATCAAATTTACTTAACATATTGTGGGGCTGCTATCGGATTTTACCAGGGGGATAATTTGAAATTGATTGACGACATGGCAGCTCTCCGGCCTACAGTGTTCGCTAGTGTTCCTCGCCTGTATAATAGAATTTATGCTAGCATTATGAATGCTGTCAAGGAATCAGGGGGACTAAGGGAAAGAATATTTAATGTTGCTTACAATGCAAAGATGAGGGCCATTTTAAACGGGAAAATTTCATCTCCAATTTGGGATAGATTAGTATTCAATAAAATTAGGGATAAACTTGGAGGGCGGGTTCGGTTAATGTTTTCAGGCGCATCACCATTATCTCCAGATGTCATGGATTTTCTTAAAGTATGCTTTGGATGCCTGATCATTGAAGGCTATGGGATGACAGAGACATCTTGCGTAATAAGTTCTATGGATGCGGATGACACTTCAAGTGGTCATGTTGGCTCACCGAATCCAGCTTGTGAAATCAAGCTTATTGATGTTCCTGAAATGAACTACACCTCTGGAGATCATCCTCATCCTCGTGGTGAAATATGTGTTAGGGGGCATACAATATTTCAAGGCTACTACAAAGATGATGCCCAAACGAAGGAGACTGTTGATGAAGATGGTTGGCTGCATACTGGAGATATTGGCTTATGGCTGCCGGATGGGTGTCTAAAAGTTATTGATAGGAAAAAAAATATTTTTAAGTTGGCCCAAGGAGAGTACATAGCTCCTGAGAAGATTGAAAATGTTTATGCGAAGTGCAAGTTTATTGCTCAGTGCTTTGTCTATGGTGACAGCTTTAATTCTTGCCTAGTTGCAGTGGTTGCAGTTGAACCTGAGATTCTGAAGGCATGGGCTGTGACAGCAGGAATTAAGTTCGAGAGCCTCCAGCAACTTTGTTCCGATCCTACTGCACGAGCTGCAGTACTTGATGAGATGGATGATGTCGGGAGACAGGCTCAGCTGAGAGGTTTTGAATTTGCAAAAGCTGTTACTTTAGTACAGGAGCCTTTCACAGTAGAGAATGGCCTTTTCACCCCAACGTTTAAGATTAAGAGGCCTCAGGCAAAGACCTATTTTGCAAGGGCTATTGCAGACATGTATGAGGAGCTATCCAAATCTTATCCTGCTCTACCGAAGTCTTCATTATGA

Network for GWHGAAEX006587

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00501.27	AMP-binding	65	527	4.40E-103

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01897	ACSL, fadD	Metabolic pathways	map01100
		Fatty acid metabolism	map01212
		Fatty acid biosynthesis	map00061
		Fatty acid degradation	map00071
		Peroxisome	map04146
		Ferroptosis	map04216
		Quorum sensing	map02024
		Adipocytokine signaling pathway	map04920
		PPAR signaling pathway	map03320
		Thermogenesis	map04714

Gene Ontology

GO term	Ontology	Name
GO:0003824	Molecular Function	catalytic activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	64.030
SRP064423	SRR2545915	Juvenile tuber	115.720
SRP108465	SRR5643513	five period of Gastrodia elata	85.180
	SRR5643514	five period of Gastrodia elata	73.720
	SRR5643515	five period of Gastrodia elata	69.870
	SRR5643524	five period of Gastrodia elata	69.270
	SRR5643525	five period of Gastrodia elata	83.320
	SRR5643528	five period of Gastrodia elata	76.340
	SRR5643658	five period of Gastrodia elata	99.040
	SRR5643659	five period of Gastrodia elata	65.680
	SRR5643660	five period of Gastrodia elata	71.220
	SRR5643661	five period of Gastrodia elata	56.690
	SRR5643662	five period of Gastrodia elata	51.080
	SRR5643663	five period of Gastrodia elata	63.170
	SRR5643664	five period of Gastrodia elata	53.760
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	137.190
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	126.870
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	117.480
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	168.040
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	165.280
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	187.740
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	153.410
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	163.110
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	113.890
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	127.740
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	93.890
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	93.890
SRP279888	Gastro	Gastrodia elata tuber	96.96
	Juven	Juvenile tuber	93.20
	Mother_Gastro	Mother tuber of Gastrodia elata	72.01
	Mother_Juven	Mother tuber of Juvenile	80.41