Detail information of GWHGAAEX006588/evm.TU.scaffold_187.27
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|15807986|ref|NP_285649.1| | 1.00E-15 | chalcone synthase [Deinococcus radiodurans R1] |
| nr | gi|743768472|ref|XP_010914511.1| | 0 | PREDICTED: 3-ketoacyl-CoA synthase 11-like [Elaeis guineensis] |
| Swissprot | tr|Q5XEP9|KCS17_ARATH | 0 | 3-ketoacyl-CoA synthase 17 |
| trEMBL | tr|K4BDV6|K4BDV6_SOLLC | 0 | 3-ketoacyl-CoA synthase {ECO:0000256|PIRNR:PIRNR036417} |
| TAIR | AT1G04220 | 0 | 3-ketoacyl-CoA synthase 2 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000184 | 704906 | 708794 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX006588
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF08392.11 | FAE1_CUT1_RppA | 26 | 310 | 9.30E-124 |
| PF08541.9 | ACP_syn_III_C | 330 | 411 | 7.30E-09 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K15397 | KCS | Metabolic pathways | map01100 |
| Biosynthesis of secondary metabolites | map01110 | ||
| Fatty acid elongation | map00062 | ||
| Plant-pathogen interaction | map04626 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006633 | Biological Process | fatty acid biosynthetic process |
| GO:0016747 | Molecular Function | transferase activity, transferring acyl groups other than amino-acyl groups |
| GO:0003824 | Molecular Function | catalytic activity |
| GO:0016020 | Cellular Component | membrane |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 1.310 |
| SRR2545915 | Juvenile tuber | 1.540 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 5.710 |
| SRR5643514 | five period of Gastrodia elata | 3.850 | |
| SRR5643515 | five period of Gastrodia elata | 2.890 | |
| SRR5643524 | five period of Gastrodia elata | 3.140 | |
| SRR5643525 | five period of Gastrodia elata | 43.590 | |
| SRR5643528 | five period of Gastrodia elata | 23.010 | |
| SRR5643658 | five period of Gastrodia elata | 17.140 | |
| SRR5643659 | five period of Gastrodia elata | 2.490 | |
| SRR5643660 | five period of Gastrodia elata | 2.880 | |
| SRR5643661 | five period of Gastrodia elata | 2.980 | |
| SRR5643662 | five period of Gastrodia elata | 6.470 | |
| SRR5643663 | five period of Gastrodia elata | 2.710 | |
| SRR5643664 | five period of Gastrodia elata | 4.420 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 10.670 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 8.300 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 12.390 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 11.980 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 20.950 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 23.230 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 9.720 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 18.180 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 13.800 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 10.610 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 7.070 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 7.070 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 3.70 |
| Juven | Juvenile tuber | 7.84 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 32.34 | |
| Mother_Juven | Mother tuber of Juvenile | 22.17 |