Detail information of GWHGAAEX006589/evm.TU.scaffold_187.28
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|46447560|ref|YP_008925.1| | 2.00E-31 | hypothetical protein pc1926 [Candidatus Protochlamydia amoebophila UWE25] |
| KOG | KOG1947 | 9.00E-170 | Leucine rich repeat proteins, some proteins contain F-box |
| nr | gi|695035999|ref|XP_009405437.1| | 0 | PREDICTED: F-box/LRR-repeat protein 3-like [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q8RWU5|FBL3_ARATH | 6.00E-122 | F-box/LRR-repeat protein 3 |
| trEMBL | tr|M0T8P3|M0T8P3_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr6P20450_001} |
| TAIR | AT5G27920 | 9.00E-170 | F-box family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000184 | 709670 | 716122 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX006589
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF13516.5 | LRR_6 | 123 | 139 | 1.4 |
| PF13516.5 | LRR_6 | 199 | 222 | 0.18 |
| PF13516.5 | LRR_6 | 354 | 377 | 0.17 |
| PF13516.5 | LRR_6 | 406 | 428 | 0.82 |
| PF13516.5 | LRR_6 | 482 | 505 | 0.9 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | F-box |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 37.420 |
| SRR2545915 | Juvenile tuber | 44.520 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 81.380 |
| SRR5643514 | five period of Gastrodia elata | 65.310 | |
| SRR5643515 | five period of Gastrodia elata | 61.690 | |
| SRR5643524 | five period of Gastrodia elata | 57.760 | |
| SRR5643525 | five period of Gastrodia elata | 97.530 | |
| SRR5643528 | five period of Gastrodia elata | 42.690 | |
| SRR5643658 | five period of Gastrodia elata | 88.400 | |
| SRR5643659 | five period of Gastrodia elata | 75.170 | |
| SRR5643660 | five period of Gastrodia elata | 106.820 | |
| SRR5643661 | five period of Gastrodia elata | 71.580 | |
| SRR5643662 | five period of Gastrodia elata | 82.130 | |
| SRR5643663 | five period of Gastrodia elata | 85.950 | |
| SRR5643664 | five period of Gastrodia elata | 97.200 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 74.210 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 55.590 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 73.640 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 85.790 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 78.400 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 71.730 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 70.490 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 71.600 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 53.720 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 45.780 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 59.330 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 59.330 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 70.48 |
| Juven | Juvenile tuber | 62.65 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 73.35 | |
| Mother_Juven | Mother tuber of Juvenile | 65.57 |