Gene detail

Detail information of GWHGAAEX006598/evm.TU.scaffold_187.38

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG3322	9.00E-54	Ribonucleases P/MRP protein subunit
nr	gi\|695004803\|ref\|XP_009388824.1\|	0	PREDICTED: ribonucleases P/MRP protein subunit POP1-like [Musa acuminata subsp. malaccensis]
trEMBL	tr\|K3XV83\|K3XV83_SETIT	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Si005840m}
TAIR	AT2G47290	9.00E-54	Unannotated protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000184	804273	811801	+

Transcript Sequence
>GWHTAAEX006598 AGTTAGGGTTTTACGGTTTCTCATCTTCTTTCCAATGGCGTTCCCGGGATCTTACAATCGCAGCAAGCCTTCTCCAAGCGCTGGCCCTCATTTACCAAGACTTCTGCTCGTCAACATGTTCGCTGAATCCAGAGCTCCGGAGCTCGATTCCCTCCACTCCATTATTTCCGATCGCCTTAACCATGATTTTCGCATGCGGCGCGAAAACCGGCGGAGAACCAAAGGCTTTCGATGCGCCAAGAATAGACAAAGGAAGAGGCCGCGTCTGATAGATGGTGCAGAACGAGAGGGGAATGAAGGGGCACAGAACGGGATTAGGCCTTCCCGAAGGGTGAGGCGACGAGTGCAGCTGCGTAGCAATCCGGCGTTTGGTTTCTGTGTGTCTGAGGACGGCACGAAAAGACTCCGAACCCATCTCTGGCATGCTAAGCGGTTCTCGATGGCGAAGCGATGGGGATTCTACCTGCCTCTTGGGCTGCAAGGCAGGGGTAAGGGCTCAAGAGCTGTTTTGAAGCGGCTGAAATCTGGAGCACTTGTACATGATTCTAGTTATAGCCATCCTGTTCAGTTGGATGGTTCAGAGGGATCTATCTTGAACATCATGAAGATGGTATTGCGGCCATTCGCCCCCAGTTTTTCAAAACAAATGCCTAAGCATTTAGTTTATGGTGCTTGCTATGCCAATTCAATGCTGTATGATGTTAGATTTCCTCTTCCCAAGTTTGTTGCTCCTGTCATTTACATGTGGATGCCACTGAAAAGACGTGAAAACTGCATGGAATATGAACAACCGGATGGTCATAGCAGCTGTAGTGAATCTGAATGCAGTACTTCAGCACGACGTTTGTGGATATGGTTGCATCCGGCTTCATACAGTGAAGGATTCATTGCACTGAAAAGTGCTTGCAAGAAAGAGATGAATGACACTGGTGCCTCTGTGAGCTGTCTTTCATTGGAGGGGCACATTGGAAGATTAGAAGTCATTGGAGCTATGTCCCTGAAGATTCTTCAAAAAGTTTTGATTCCTACACCAGAGCCTGGCAAATCTCTATCTAGCAGTGCTTCTTTGACATCGTGCTCAAAGTCACGGCCACGTAGTAATTTTGTTCTTGAGCATGCTGATCGGCTTCCATTTCAAGCCATTTTTTCTTTAGAAGTTCAGGATCCCCGTATTTTACATGTGAACGATACCATTTTGCTCCCTAAAACAACCAGTATTGTCGATCATTCTGCACAGCATCAGGGTCTTGTTGAAGATTCCTCTGAAAGATTCTCTGAAGAATCAACCATAAATTATGACTTGCTGCTTTCATTCTGGTCAAAATCGGATGCAGATGAAGTTTTTCTTTCTGACTGCAAACAGCTATGGGATTCTTGTATAAATCTGAACCCTCCGTTGCCTGAAAATATCATTTGCAAGGAGAGGCAATGTAAGCGCTTAAAAGACTTTTATTTGGAGCCTGCCCAGTATGGAGAGTCAGGTAATGAAGCAGGAGAAGCTTATGATCGGTCTTGCCCAATTATACTCTTAAGGCATGCAGACCACGGAGCGTTTAATTCAGGGTGGTCTGTAATTCTTCCTTTAAGTTGGGTAAAACCATTCTGGATGACTCTCATCTCAAATGGAGCTCGTGCCATTGGCTTAAGAGAACTACATTGGATAGCATGTAATTGTGGGTTGCCCTCATTCCCACTCGATTTCCCTGATTCGGAAGCATATACATCACTAGTTGCAGCTGAAACTGCAAAAGCCGATGAAGCCGCTAGGCTTCGACCTCCTGCTGTGAGGCCCATTAATGTTCCCTTTGCTTCTCAATGGCATTGTGTGGTTCAATCTATTAATAGAGTATTTAAAATCGATGAATCATGCTGCACTGTGCCATCAAGTTCTGAATTTTCAATTTTAAGAACTTTAAATGATTTAAATTATCTGCTTGAAAAAACTGGCGGTGAAGGAAATCTTGGCCAAGTTGGAGGACTCTTCTTTGTTAGAGTTCTGATTCATGCTTTCAAGGAAGGTTCTTTTGAAGAAGCAGCTGTTATCTGCGCCCCTGAACCTTCTGATATTCCCGCATGGACGTCCAGATCAGAGAAGCATGCTCCACTGCAAATGCCAGATTCTTTCATTAAATGTTATTTTACCAGGGAAGAATCTGGCAAGTGGGAGCTTCAGGTGCCGCAGGATCCATTGATAATGCAGTGGTACAGGTGGCCAATTGGCTTCATATCTACCGGCTTTGTTAGAGGAAGCAGCGGACCTGTTGCTGTTGCATTCTGCGAGGCAAGGATCCTTAGAAGGTTGAAGGAGCAGCAGGAAAGATTGGCGGGGTCCGCCGCCGCTCCCCAGATTTTCGTCTTGGTCAGGAATCTGAGGTCGAGCGCTTATCGCCGTGCGACCGCCACTATCTCTCTGGACCTGCAAGACGAAGATCTGGATTTCATGTAGGATCTGCAAAACTTTGATGCTCAGATAGTTTCGACATTGATGAAATGGTACTGTTTTATTTGTAAAAGTTTGGGTGCTGGATATGTAAAATATAAAATTTTTGTGATTGAGTTGGTAAATATCCTTTCTTATAATTAGGTACAATTTCTGCATCATTTAATTATGACATCAGCTGGTGGTTTCATGTTGGAAAGTCTTTTATATGCTTGGCATCAAAACTTTTATATTTACAGAATTGGTGGCGCTTTATTTGTAAAGGTTAAAAAGTTTGGGTGTTGGATATGCAAATTATAAAATATTGGTGGCGGAGTTGGTAAATATTTCTTCTTATAATTTTGGCGTGCTCGTTTTAAAGTGGCAATTGCTGGAGTAGCCCAGCGGCTTTTTGTATTTACATATCTAACACCCTGTTTACCTGTGTG

Network for GWHGAAEX006598

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF06978.10	POP1	54	181	8.60E-13
PF08170.11	POPLD	510	586	2.00E-16

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01164	POP1	RNA transport	map03013
K01164	POP1	Ribosome biogenesis in eukaryotes	map03008

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	9.750
SRP064423	SRR2545915	Juvenile tuber	7.290
SRP108465	SRR5643513	five period of Gastrodia elata	5.580
	SRR5643514	five period of Gastrodia elata	6.690
	SRR5643515	five period of Gastrodia elata	5.830
	SRR5643524	five period of Gastrodia elata	5.790
	SRR5643525	five period of Gastrodia elata	3.930
	SRR5643528	five period of Gastrodia elata	2.480
	SRR5643658	five period of Gastrodia elata	2.270
	SRR5643659	five period of Gastrodia elata	9.910
	SRR5643660	five period of Gastrodia elata	10.350
	SRR5643661	five period of Gastrodia elata	8.920
	SRR5643662	five period of Gastrodia elata	9.910
	SRR5643663	five period of Gastrodia elata	9.030
	SRR5643664	five period of Gastrodia elata	10.220
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	9.150
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	8.400
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	10.510
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	10.000
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	9.400
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	10.170
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	10.400
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	11.170
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	9.570
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	11.170
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	7.760
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	7.760
SRP279888	Gastro	Gastrodia elata tuber	15.84
	Juven	Juvenile tuber	12.32
	Mother_Gastro	Mother tuber of Gastrodia elata	6.38
	Mother_Juven	Mother tuber of Juvenile	5.68