Detail information of GWHGAAEX006601/evm.TU.scaffold_187.41


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG34063.00E-6040S ribosomal protein S12
nrgi|743855658|ref|XP_010941540.1|9.01E-84PREDICTED: 40S ribosomal protein S12-like [Elaeis guineensis]
Swissprottr|Q9XHS0|RS12_HORVU8.00E-8140S ribosomal protein S12
trEMBLtr|M0RZX4|M0RZX4_MUSAM4.00E-8240S ribosomal protein S12 {ECO:0000256|RuleBase:RU000670}
TAIRAT2G320603.00E-60Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000184867195873018+
Transcript Sequence

Network for GWHGAAEX006601

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01248.25Ribosomal_L7Ae351282.10E-28
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02951RP-S12e, RPS12 Ribosome map03010

Gene Ontology

GO term OntologyName
GO:0006412Biological Processtranslation
GO:0003735Molecular Functionstructural constituent of ribosome
GO:0005840Cellular Componentribosome

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms10.380
SRR2545915Juvenile tuber17.110
SRP108465SRR5643513five period of Gastrodia elata40.680
SRR5643514five period of Gastrodia elata46.430
SRR5643515five period of Gastrodia elata43.950
SRR5643524five period of Gastrodia elata46.750
SRR5643525five period of Gastrodia elata19.650
SRR5643528five period of Gastrodia elata22.680
SRR5643658five period of Gastrodia elata21.870
SRR5643659five period of Gastrodia elata35.450
SRR5643660five period of Gastrodia elata37.390
SRR5643661five period of Gastrodia elata44.230
SRR5643662five period of Gastrodia elata31.740
SRR5643663five period of Gastrodia elata32.880
SRR5643664five period of Gastrodia elata31.780
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_139.040
SRR6049655Rhizomagastrodiae_C368-T10_good_165.620
SRR6049656Rhizomagastrodiae_C368-T07_good_157.680
SRR6049657Rhizomagastrodiae_C368-T07_good_140.170
SRR6049658Rhizomagastrodiae_C368-T04_good_142.930
SRR6049659Rhizomagastrodiae_C368-T04_good_138.480
SRR6049660Rhizomagastrodiae_C368-T01_good_150.570
SRR6049661Rhizomagastrodiae_C368-T04_good_144.750
SRR6049662Rhizomagastrodiae_C368-T01_good_163.950
SRR6049663Rhizomagastrodiae_C368-T01_good_164.180
SRR6049664Rhizomagastrodiae_C368-T10_good_164.520
SRR6049665Rhizomagastrodiae_C368-T10_good_164.520
SRP279888GastroGastrodia elata tuber 72.77
JuvenJuvenile tuber79.56
Mother_GastroMother tuber of Gastrodia elata 47.15
Mother_JuvenMother tuber of Juvenile 51.57