Detail information of GWHGAAEX006603/evm.TU.scaffold_187.43


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG28806.00E-148SMAD6 interacting protein AMSH, contains JAB/MPN/Mov34 domain
nrgi|743820255|ref|XP_010931734.1|0PREDICTED: AMSH-like ubiquitin thioesterase 3 isoform X1 [Elaeis guineensis]
Swissprottr|Q5PNU3|AMSH3_ARATH4.00E-179AMSH-like ubiquitin thioesterase 3
trEMBLtr|M0SHE2|M0SHE2_MUSAM0Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr3P24260_001}
TAIRAT1G487906.00E-148associated molecule with the SH3 domain of STAM 1

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000184880958906353+
Transcript Sequence

Network for GWHGAAEX006603

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF08969.10USP8_dimer251123.50E-09
PF01398.20JAB3474543.40E-17
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyJAMM

KEGG pathway

KO Enzyme pathway mapID
K11866STAMBP, AMSH Endocytosis map04144

Gene Ontology

GO term OntologyName
GO:0005515Molecular Functionprotein binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms46.160
SRR2545915Juvenile tuber42.530
SRP108465SRR5643513five period of Gastrodia elata18.280
SRR5643514five period of Gastrodia elata20.780
SRR5643515five period of Gastrodia elata19.690
SRR5643524five period of Gastrodia elata19.960
SRR5643525five period of Gastrodia elata22.750
SRR5643528five period of Gastrodia elata30.000
SRR5643658five period of Gastrodia elata29.300
SRR5643659five period of Gastrodia elata22.200
SRR5643660five period of Gastrodia elata23.710
SRR5643661five period of Gastrodia elata21.860
SRR5643662five period of Gastrodia elata27.610
SRR5643663five period of Gastrodia elata27.570
SRR5643664five period of Gastrodia elata28.800
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_122.200
SRR6049655Rhizomagastrodiae_C368-T10_good_131.810
SRR6049656Rhizomagastrodiae_C368-T07_good_123.100
SRR6049657Rhizomagastrodiae_C368-T07_good_123.670
SRR6049658Rhizomagastrodiae_C368-T04_good_128.200
SRR6049659Rhizomagastrodiae_C368-T04_good_131.140
SRR6049660Rhizomagastrodiae_C368-T01_good_124.930
SRR6049661Rhizomagastrodiae_C368-T04_good_127.250
SRR6049662Rhizomagastrodiae_C368-T01_good_121.020
SRR6049663Rhizomagastrodiae_C368-T01_good_124.430
SRR6049664Rhizomagastrodiae_C368-T10_good_124.390
SRR6049665Rhizomagastrodiae_C368-T10_good_124.390
SRP279888GastroGastrodia elata tuber 44.88
JuvenJuvenile tuber40.47
Mother_GastroMother tuber of Gastrodia elata 40.47
Mother_JuvenMother tuber of Juvenile 58.26