Gene detail

Detail information of GWHGAAEX006604/evm.TU.scaffold_187.44

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG2051	Nonsense-mediated mRNA decay 2 protein
nr	gi\|743814137\|ref\|XP_010929941.1\|	PREDICTED: regulator of nonsense transcripts UPF2-like [Elaeis guineensis]
Swissprot	tr\|F4IUX6\|RENT2_ARATH	Regulator of nonsense transcripts UPF2
trEMBL	tr\|M0TJ49\|M0TJ49_MUSAM	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr7P20120_001}
TAIR	AT2G39260	binding;RNA binding

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000184	907385	965113	-

Transcript Sequence
>GWHTAAEX006604 CTTCTTCTCATTCAGCGCAGGTTTCTTTATCCTTTGAAGAACTCTGCAATCCTTCATCTTCTCCTCCTCATCGGTTTTTTCTCCTTCGAGAACTCTGCGATCTTACCTCTGGCATATTGGAATAAATAATTATGGATATCTACCATGATGCAGATAGTGATGATCTCAGGAGAAAAATGGAGCATCCAGAAGATGAACGTCATTCAGTTGGGGAACAGCATAGCAAGCTTGATGAAGATGAAAATATTTCTCGGATTGAATACAAAAGATCTATTGATATGAAGATTGCTCTTCGTCAGAGTAATTTGAACCCAGAACGGCCTGATTCAGGTTTTCTTAGGACACTTGACTCTAGTATCAAGCGCAACACAGCGGTAATCAAGAAGCTTAAACAGATAAATGATGAGCAACGGGAAGGACTTATTGAGGAGCTGCGAAGTGTGAACCTGAGTAAATTTGTTAGTGAAGCTGTGGCAGCTATCTGTGAAGCTAAGCTTAAAACTTCAGATATACAAGCTGCTGTCCAGGCGTGTTCATTGCTACATCAAAGGTATAAGGATTTCTCCCCTAGCTTGATTCAAGGTCTTCTGAAAGTTTTTTACCCTGGAAAAAGCGGAGATGATTTGGAAGCTGAAAAGAGCCTTAAAGCAATGAAGAAGAGGAGCACTTTGAAACTTCTTATAGAACTTTTTTTTGTTGGGGTTGTGGAGGATGCTAGCATTTTTGTGAACATTATTAAAGACCTTACAGGCTTAGAGCATTTGAAGGACCGTGATTCAACTCAGACAAACCTGTCCCTTCTCACCAGTTTTACTAGGCAAGGGAGGGTCTTTTTGGGTATGCACCAGCCAGGACAAGAAGTTGATGAGGAGTTTTATAAAGGCCTGAACGTAGCAGTGGAGCAAAAAAAACAATTCAAGAAAGCATTGCACTCATACTATGATGCTGTTACTGAGCTGCTACAAGCCGATCATAATTCACTTCGGATGATGGAACTTGATAATGCAAAGATGTTAAATGCTCGAGGGGAGCTTAATGAAGATAATGTGACTGCATATGAAAAACTTCGTAAATCTTATGATCATCTTTTTCGTGGTGTTTCATCACTTGCTGAGGCTCTTGACATCGAACCACCATTGATGCCTGACGATGGTCATACAACTAGGGTTACTAGTGGTGCAGACGAGTCTGCTGCTTCTGGAAAGGAGTCAGTACCTGAACCTATATGGGATGACGATGATACAAGAACCTTCTATGAATCCTTACCTGATCTCAGAGCATTTGTTCCTGCTGTACTGTTGGGAGAAGCAGAGCTAAAGATGAATGAACAAATTCAGAAGAACCAAGAGCAACAAAATGAACCTGCTATGGAGCCTGAAATTATGCTGCAAGAGAATGCTGAAGTGAATGTCGACTCAGATTCTTTACTTGATGCGAAAGCAGATGAAAAAGCTAAAGATGAGGACAAAGAGAAACATAAAGTGAAGGAACCAGAGAGAAAAGGGGATGAGAAGGAAAAGTTGAAAGGTCTGGATGGCACGAGCTTGGATGCTTTGTTGCAAAGACTCCCAGGTTGTGTAAGCCGTGATTTTATTGACCAGTTAACGGTGGAATTTTGCTATTTAAATTCTAAAGCAAATAGGAAGAAGCTTGTTCGGACTTTGTTTAATGTTCCTAGAACCTCTTTAGAGCTATTGCCTTACTATTCTCGCATGGTAGCCACGTTATCAACTTGTATGAAGGATGTTCCAACTATTCTTGTATCAATGCTCGAAGAGGAGTTTAACTTTTTGATAAACAAGAAGGATCAGACAAATATTGAGACCAAAATAAAGAATATTAGGTTTATTGGAGAGCTGTGCAAATTTAGAATTACCCCTGCAAGTCTTGTTTTTACTTGTTTAAAGGCTTGTTTAGATGATTTTAATCATCATAACATCGACGTGGCGTGCAATCTTCTTGAGACATGTGGGCGTTTTCTATATCGCGCTCCTGAAACTTCAATTAGAATGGCGAATATGTTGGAAATATTGATGCGTCTTAAAAATGTAAAAAATTTGGATCCTCGTCATAGTACGCTCGTGGAAAATGCTTATTACCTCTGCAAACCGCCTGAACGGTCCGCTCGGGTCAATAAAGTGAGACCTCCATTGCATCAGTATATCAGAAAATTGCTATTCTCGGATCTCGACAAGTCCTCTGCTGAGCATGTACTCAGGCAACTGCGCAAGCTTCCATGGGATGAGTGTGAACATTATGTTCTCAAGTGTTTTATGAAGGTTCACAAGGGAAAGTACAGTCAGGTGCATTTGATTGCTTTGCTCACAGCAGGCCTCAGCCGCTACCACAATGAATTTGCTGTGGCAGTTGTTGATGAGTTATTGGAGGAAATTCGGGTGGGGCTGGAATTGAATAACTACAACATGCAGCAGCGGCGTTTAGCTCACATGCGGTTCTTAGGGGAGCTATACAACTATGAGCTCATTGATTCTTCTGTCATTTTCGAAACATTGTATCTCATTCTAATTTTTGGCAATGGAACTTCAGAGCAAGATGCGTTGGATCCACCGGAGGATTGCTTCCGAATAAGAATGATTTTGACGCTTCTTCAGACGTGTGGGCACTACTTTGACAGAGGCTCCTCAAAGAGAAAGTTGGATCGCTTTCTAATGTATTTTCAGAGATACGTGCTCAGTAAAAGCCAGATTCCGCTTGATATTGAGTTTGATATTCAGGACATGTTTGCTGACCTGAGGCCAAAGATGAGCCGCTGCACATCAATCGAGGAAATCAATGCGGTGCTAATCGAGATGGAGGAGCACGAGCGCGACAAGGCTGGCGTCGAGAAACACTCCGACAATGAGTCTCAAAAGGTTCCGTCCAAATCGGCCGTCTCCTCAGGCGCGGCTAATGGCGGCCGCCGCAGCTCGACTAATGGGCTCGATGAGAACGGCCGGGAGCACAATGATGCCGCCGAGAGCGATAGCTACTCTGACAATGGCAGCGTCGACCAGGAGGGGCGCGAGGAAGACGAGGATATTCTCTACGAGGACGGAAAGACTGATGATGGATCCGAGGGCGATGATGATGAGGATGATGATGTAGGGCCGGATGGCGGCTCCGACGATGATGATAATGACATTCAGGTGAGGCAGAAGAAGGTGGTTGAAGTTGACCCCAAGGAGGAAGAGGAGTTCGATCGGGAGCTACGGGCCCTCATGCAGGAGAGCATCGAGTCCCGGAGGCTTGAGCTCCGGGCCCGGCCCACTCTGAACATGACGATACCCATTAGTATTTTCGAAGGGACGAGCAAGGATTCGGCCAGGACCGCCGAGGGGGAGAGCGGCGAGGAGACGGCCGACGAAGACGGCGGTGGCAACAAGGTTCGGGTGAAGGTGCTTGTGAAGAAGGGGAATAAGCAGCAGACCAGACAGATGCTCATCCCTCGTGAGTCTTCCCTGGTACAGAGCACGAAGCAGCAAGAGGCGGCGGAGCTGGAAGAGAAGCAGGACATCAAGAGGAAGATATTGGAGTACAACGAGCGGGAAGAAGAGGAGTCCAACGGCTTTTATTCTTCGTCCCAGCCTGGAAATAGCTGGATCGCAGGCAGCTCCGGCGGTGGCCGCCCGCCTTCGGGCAGAACCAGCTGGGAGGCTGCCGGGAGAACTACTCCAAGGCAGCAGCGGCAGCATTCCACCGCCGGCAGCTTTTATCCTGGTTACGTGAGAAGAAAGTGATCACAGATATATTCATACGCCCACTGTGCATTCATGTGGGAGCTATGTTAATTGTCTGCTATTTGATCTGTGCTATATTGTGGCTGCCATTACTAGTGCTTGTTTGTCTGAAAATAGGTCCTTGATTGTTGGAATTATTCCCTGCATAATCTAAAACTTGTACTTTTTGTTCATGTATGATAATTAAAAAGATTGGATGAGAAGTTATGTTTGATATACTTATACAAATTTAAGTAAAAATTTAGTGTTGAAAGATGGTGATAGATTTATACATTTG

Network for GWHGAAEX006604

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02854.18	MIF4G	78	258	8.40E-08
PF02854.18	MIF4G	476	660	4.80E-29
PF02854.18	MIF4G	678	872	9.10E-42
PF04050.13	Upf2	1000	1134	9.60E-36

Protein Sequence

>GWHPAAEX006604
MDIYHDADSDDLRRKMEHPEDERHSVGEQHSKLDEDENISRIEYKRSIDMKIALRQSNLNPERPDSGFLRTLDSSIKRNTAVIKKLKQINDEQREGLIEELRSVNLSKFVSEAVAAICEAKLKTSDIQAAVQACSLLHQRYKDFSPSLIQGLLKVFYPGKSGDDLEAEKSLKAMKKRSTLKLLIELFFVGVVEDASIFVNIIKDLTGLEHLKDRDSTQTNLSLLTSFTRQGRVFLGMHQPGQEVDEEFYKGLNVAVEQKKQFKKALHSYYDAVTELLQADHNSLRMMELDNAKMLNARGELNEDNVTAYEKLRKSYDHLFRGVSSLAEALDIEPPLMPDDGHTTRVTSGADESAASGKESVPEPIWDDDDTRTFYESLPDLRAFVPAVLLGEAELKMNEQIQKNQEQQNEPAMEPEIMLQENAEVNVDSDSLLDAKADEKAKDEDKEKHKVKEPERKGDEKEKLKGLDGTSLDALLQRLPGCVSRDFIDQLTVEFCYLNSKANRKKLVRTLFNVPRTSLELLPYYSRMVATLSTCMKDVPTILVSMLEEEFNFLINKKDQTNIETKIKNIRFIGELCKFRITPASLVFTCLKACLDDFNHHNIDVACNLLETCGRFLYRAPETSIRMANMLEILMRLKNVKNLDPRHSTLVENAYYLCKPPERSARVNKVRPPLHQYIRKLLFSDLDKSSAEHVLRQLRKLPWDECEHYVLKCFMKVHKGKYSQVHLIALLTAGLSRYHNEFAVAVVDELLEEIRVGLELNNYNMQQRRLAHMRFLGELYNYELIDSSVIFETLYLILIFGNGTSEQDALDPPEDCFRIRMILTLLQTCGHYFDRGSSKRKLDRFLMYFQRYVLSKSQIPLDIEFDIQDMFADLRPKMSRCTSIEEINAVLIEMEEHERDKAGVEKHSDNESQKVPSKSAVSSGAANGGRRSSTNGLDENGREHNDAAESDSYSDNGSVDQEGREEDEDILYEDGKTDDGSEGDDDEDDDVGPDGGSDDDDNDIQVRQKKVVEVDPKEEEEFDRELRALMQESIESRRLELRARPTLNMTIPISIFEGTSKDSARTAEGESGEETADEDGGGNKVRVKVLVKKGNKQQTRQMLIPRESSLVQSTKQQEAAELEEKQDIKRKILEYNEREEEESNGFYSSSQPGNSWIAGSSGGGRPPSGRTSWEAAGRTTPRQQRQHSTAGSFYPGYVRRK

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K14327	UPF2, RENT2	RNA transport	map03013
K14327	UPF2, RENT2	mRNA surveillance pathway	map03015

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding
GO:0003723	Molecular Function	RNA binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	77.890
SRP064423	SRR2545915	Juvenile tuber	74.860
SRP108465	SRR5643513	five period of Gastrodia elata	48.070
	SRR5643514	five period of Gastrodia elata	46.000
	SRR5643515	five period of Gastrodia elata	43.280
	SRR5643524	five period of Gastrodia elata	46.470
	SRR5643525	five period of Gastrodia elata	57.940
	SRR5643528	five period of Gastrodia elata	49.270
	SRR5643658	five period of Gastrodia elata	65.890
	SRR5643659	five period of Gastrodia elata	49.990
	SRR5643660	five period of Gastrodia elata	52.990
	SRR5643661	five period of Gastrodia elata	47.700
	SRR5643662	five period of Gastrodia elata	47.490
	SRR5643663	five period of Gastrodia elata	48.720
	SRR5643664	five period of Gastrodia elata	57.370
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	53.720
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	38.310
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	49.720
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	58.510
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	53.840
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	63.250
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	57.840
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	57.110
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	46.420
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	50.480
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	48.150
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	48.150
SRP279888	Gastro	Gastrodia elata tuber	58.66
	Juven	Juvenile tuber	80.81
	Mother_Gastro	Mother tuber of Gastrodia elata	45.68
	Mother_Juven	Mother tuber of Juvenile	64.08