Gene detail

Detail information of GWHGAAEX006608/evm.TU.scaffold_187.48

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|288931818\|ref\|YP_003435878.1\|	5.00E-69	hypothetical protein Ferp_1452 [Ferroglobus placidus DSM 10642]
KOG	KOG2036	0	Predicted P-loop ATPase fused to an acetyltransferase
nr	gi\|743755508\|ref\|XP_010911908.1\|	0	PREDICTED: UPF0202 protein At1g10490-like isoform X2 [Elaeis guineensis]
Swissprot	tr\|Q9XIK4\|U202A_ARATH	0	UPF0202 protein At1g10490
trEMBL	tr\|M0SJN9\|M0SJN9_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr3P32250_001}
TAIR	AT1G10490	0	Domain of unknown function (DUF1726) ;Putative ATPase (DUF699)

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000184	1028887	1073412	+

Transcript Sequence
>GWHTAAEX006608 ATGAGGAAAATCGTTGACAGTCGAATTCGAACCCTCATAGAGAATGGCGTCAAGCAGCGGCACCGTTCAATGTTTGTCATTATTGGAGACAAGTATCGTAATCAGATTGTGAATCTTCACTATATGTTAAGCAAAGCAGTCATAAAATCACGTCCAACAGTCTTATGGTGCTATAAACAGAAGCTGGAGCTTAGCAGTCACAAGAAAAAGCGTGCTAAACAGGTTAAAAAGTATATGCAGAGGGGCTTGTTGGACCCGGAGAAAGTTGATGCATTTTCTCTCTTTGTTGAAAGTGCAAATATAACTTATTGCCTGTACAAGGACTCTGACAGAGTATTGGGCAATACCTTTGGCATGTGCATTCTCCAGGATTTTGAGGCATTGACTCCAAATATTTTAGCAAGAACTATTGAAACAGTCGAGGGTGGAGGCCTGGTGATTTTGTTGCTTCATTCTTTACCTTCCCTAACTAGTCTTTACACCATGGTGATGGATGTCCATGAACGGTTTAGGACAGAATCTCATTCTCATACTGTTCCACGGTTTAATGAACGTTTCTTGTTATCCATTGCGTCATGCAAGGCATCTCTTGTTGTGGATGATGAGCTTAACATTCTACAAATATCATCTCATATACGATCAATCTTACCAGTGGCAGTTGCAGAGGATTCTGAAGGATTATCGGAAAAAGAACGGGAACTTAAGGATTTGAAAGAGCAGTTTCGTGATGAACTTCCTGTTGGTCCTTTGATTGGGAAATGTTGCACGTTGGACCAGGCAAAAGGTGTCATTACATTTCTAGATGCCATCTTTGACAAGACACTTAGAAGCACTGTTGCTCTAATAGCTGCTCGTGGACGAGGCAAATCAGCTTCTTTGGGTCTTGCTGTAGCAGGGGCAGTTGCTACTGGGTATTCGAACATTTTTGTTACTGCACCTAACCCTGAGAACCTTAAAACGTTGTTTGAGTTCATTTGCAAGGGTCTTAATTCATTGGAATACAAGGAGCATTTGCACTATGATGTGGTGAAGAGTGTTGATTTAGATATAAAGAAGGTGACAATTCAGATAAATGTATTCAAGCAACATCGACAAACAATTCAGTATCTGAAGCCTCAAGATCACAGAAAACTTACACAAGTGGAGCTTCTTGTTATTGATGAAGCTGCTGCTATTCCACTGCCCACTGTGAAGTCTTTATTGGGCCCATATCTGGTGTTTCTCTCATCTACTGTTAATGGATATGAAGGAACCGGTCGATCATTATCTTTAAAGCTTCTTCAACAGTTAGAATCACAAAGTCAAATTACCACTCAGAACGTTGAAGGTCCTCATTCTGGTAGATTATTCAAGAAGGTGGAATTGCACGAGTCCATTAGATATGGTTCAAGCGATCCCATTGAATCTTGGCTAAATGGTTTGCTTTGTCTTGAGGTTGCAAATTATATCCCAATTATGAGCAGAATGCCTCATCCTAGTGAATGTGATCTTTATTATGTTAATCGAGATACACTTTTCTCTTATCACAAAGAGAGTGAAATATTTTTACAGAGAATGATGGCACTATATGTAGCTTCGCACTACAAAAATTCACCAAATGACTTGCAATTAATGGCGGATGCTCCATCACATCACTTATTTGTATTGCTTGGCCCAGTTGATGAGTCACAAAATCAGCTCCCTGATATTCTCTGTGTGATTCAGGTTTGCCTTGAAGGAAAAATTTCTCAAAAGTCGGCTATCAAAAGTTTAAGTGAAGGGCATTCACCTTCTGGTGACCAGATCCCTTGGAAATTTTGTGAACAATTTCAAGACAATGTATTTCCAAGCCTTTCTGGAGCCCGCATTGTTCGTATTGCTGTCCATCCAAGTGCAATGAGGCTGGGATATGGTTCTGCTGCAGTTGACCTTCTAACAAGGTACTACGAAGGGCAATTGTCGCATTTTGCAGAGGATGATGCCAAGGAGATCATAGAACCTGAAGTTAAAGCTTTCGAAGCTGCACAAAAGGTATCTCTGTTAGAGGAGAACATAATGCCCAGAGCTAACCTTCCTCCACTTCTTGTTCATCTGCGAGAGCGATATCCCGAAAAGCTCCATTACATTGGTGTTTCTTTTGGGCTAACTCGGGATCTATTTCGATTTTGGAGGAAACACAATTTCATTCCGTTCTATATCGGCCATATATCAAATGCTGTGACTGGTGAACATACATGTATGGTTTTGAAGCCATTGAACAATGATGAAATTGAGGTTAATAGTTCCAGTCAATGTGGTTTTCTTGAGCCATTTTATCAAGATTTCTGCAGAAGATTTTGCAGACTTCTCGGCACCACTTTTCAAACCATTGATTATAAACTTGCCATGAGCATTCTGGCTTCAAAGATAAACTTTACTGATCATGAAGATGCATCAAACGGAAGGAATGCACATTCATTGGGGAGCTTGTTGTCTCCTTTTGATATGAAGAGGCTGGAAGCATACACAAATAACAGTGTTGACTTTCACATGATTCTTGATCTTGTGCCTGTCCTCGCATATCACTTCTTCCAAGGTGAGCTCCCTGTTTCATTATCTCCCGTTCAAGCCTCTGTTTTGTTCTGCATAGGTATGCAAAACCAAAGCATCACATATATAAAGGGGGAAATGAAATTAGAAAGAGAGCAGGTACTATCACTATTTATTAAAGTTATGAAGAAGTTTTATAATTACTTATACAACGTTGCTTCCAAAGAGATTGATGCCACTTTACCTCGACTTAAGGAGGTTTGTTTTTTTGGCACTTTCCATTTTTTATTTATCTTTGTTATGTTGCAAGTTGCAAAAATGAAGGCTGAGAACGAGGGCATCTTGAAGTCAGAGCTTCTTCAAAAATATGCCATTGTAGACAGGGAGGTGGATTTTGAGAGGGCCCTTCAGAGTGGTGCCGTCAAGTTATCTTCAAGTGGCCTTGTCAGTGTCAAGTCGAGTAAGTCAAAGATGGAGAATGGGGCAAAAAATAAGCTGTCCAAGGAAAAAAAGAGGAAAAAGAAGAGTCATGTGGATGGATTTAATAGAAATTCTCAAAAAAAGATGAGAAATTGA

Network for GWHGAAEX006608

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08351.10	DUF1726	106	200	1.90E-29
PF05127.13	Helicase_RecD	281	478	1.10E-59
PF13718.5	GNAT_acetyltr_2	518	746	1.60E-92
PF13725.5	tRNA_bind_2	760	922	5.10E-56

Protein Sequence

>GWHPAAEX006608
MRKIVDSRIRTLIENGVKQRHRSMFVIIGDKYRNQIVNLHYMLSKAVIKSRPTVLWCYKQKLELSSHKKKRAKQVKKYMQRGLLDPEKVDAFSLFVESANITYCLYKDSDRVLGNTFGMCILQDFEALTPNILARTIETVEGGGLVILLLHSLPSLTSLYTMVMDVHERFRTESHSHTVPRFNERFLLSIASCKASLVVDDELNILQISSHIRSILPVAVAEDSEGLSEKERELKDLKEQFRDELPVGPLIGKCCTLDQAKGVITFLDAIFDKTLRSTVALIAARGRGKSASLGLAVAGAVATGYSNIFVTAPNPENLKTLFEFICKGLNSLEYKEHLHYDVVKSVDLDIKKVTIQINVFKQHRQTIQYLKPQDHRKLTQVELLVIDEAAAIPLPTVKSLLGPYLVFLSSTVNGYEGTGRSLSLKLLQQLESQSQITTQNVEGPHSGRLFKKVELHESIRYGSSDPIESWLNGLLCLEVANYIPIMSRMPHPSECDLYYVNRDTLFSYHKESEIFLQRMMALYVASHYKNSPNDLQLMADAPSHHLFVLLGPVDESQNQLPDILCVIQVCLEGKISQKSAIKSLSEGHSPSGDQIPWKFCEQFQDNVFPSLSGARIVRIAVHPSAMRLGYGSAAVDLLTRYYEGQLSHFAEDDAKEIIEPEVKAFEAAQKVSLLEENIMPRANLPPLLVHLRERYPEKLHYIGVSFGLTRDLFRFWRKHNFIPFYIGHISNAVTGEHTCMVLKPLNNDEIEVNSSSQCGFLEPFYQDFCRRFCRLLGTTFQTIDYKLAMSILASKINFTDHEDASNGRNAHSLGSLLSPFDMKRLEAYTNNSVDFHMILDLVPVLAYHFFQGELPVSLSPVQASVLFCIGMQNQSITYIKGEMKLEREQVLSLFIKVMKKFYNYLYNVASKEIDATLPRLKEVCFFGTFHFLFIFVMLQVAKMKAENEGILKSELLQKYAIVDREVDFERALQSGAVKLSSSGLVSVKSSKSKMENGAKNKLSKEKKRKKKSHVDGFNRNSQKKMRN

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K14521	NAT10, KRE33	Ribosome biogenesis in eukaryotes	map03008

Gene Ontology

GO term	Ontology	Name
GO:0034470	Biological Process	ncRNA processing
GO:0016072	Biological Process	rRNA metabolic process
GO:0008080	Molecular Function	N-acetyltransferase activity
GO:0005524	Molecular Function	ATP binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	33.180
SRP064423	SRR2545915	Juvenile tuber	42.650
SRP108465	SRR5643513	five period of Gastrodia elata	22.340
	SRR5643514	five period of Gastrodia elata	19.730
	SRR5643515	five period of Gastrodia elata	18.260
	SRR5643524	five period of Gastrodia elata	17.100
	SRR5643525	five period of Gastrodia elata	9.620
	SRR5643528	five period of Gastrodia elata	7.940
	SRR5643658	five period of Gastrodia elata	7.720
	SRR5643659	five period of Gastrodia elata	29.750
	SRR5643660	five period of Gastrodia elata	30.270
	SRR5643661	five period of Gastrodia elata	25.490
	SRR5643662	five period of Gastrodia elata	27.550
	SRR5643663	five period of Gastrodia elata	27.650
	SRR5643664	five period of Gastrodia elata	27.570
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	27.110
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	21.050
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	23.020
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	31.250
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	26.210
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	26.980
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	29.610
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	26.870
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	28.370
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	27.350
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	25.320
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	25.320
SRP279888	Gastro	Gastrodia elata tuber	34.13
	Juven	Juvenile tuber	35.16
	Mother_Gastro	Mother tuber of Gastrodia elata	9.57
	Mother_Juven	Mother tuber of Juvenile	14.61