Detail information of GWHGAAEX006610/evm.TU.scaffold_187.50


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG41971.00E-61FOG: PPR repeat
nrgi|743793503|ref|XP_010923947.1|8.09E-177PREDICTED: pentatricopeptide repeat-containing protein At4g21170 [Elaeis guineensis]
Swissprottr|O49558|PP331_ARATH8.00E-88Pentatricopeptide repeat-containing protein At4g21170
trEMBLtr|F6H7K6|F6H7K6_VITVI6.00E-120Putative uncharacterized protein {ECO:0000313|EMBL:CCB48167.1}
TAIRAT4G211701.00E-61Tetratricopeptide repeat (TPR)-like superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000018410984281100113-
Transcript Sequence

Network for GWHGAAEX006610

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01535.19PPR2052270.76
PF01535.19PPR2362650.0027
PF01535.19PPR3443720.011
PF01535.19PPR4504760.058
PF13041.5PPR_24805277.00E-10
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515Molecular Functionprotein binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms10.610
SRR2545915Juvenile tuber12.610
SRP108465SRR5643513five period of Gastrodia elata13.400
SRR5643514five period of Gastrodia elata17.360
SRR5643515five period of Gastrodia elata13.600
SRR5643524five period of Gastrodia elata14.330
SRR5643525five period of Gastrodia elata19.230
SRR5643528five period of Gastrodia elata10.470
SRR5643658five period of Gastrodia elata16.020
SRR5643659five period of Gastrodia elata17.190
SRR5643660five period of Gastrodia elata14.610
SRR5643661five period of Gastrodia elata17.970
SRR5643662five period of Gastrodia elata15.440
SRR5643663five period of Gastrodia elata18.590
SRR5643664five period of Gastrodia elata18.000
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_115.360
SRR6049655Rhizomagastrodiae_C368-T10_good_110.650
SRR6049656Rhizomagastrodiae_C368-T07_good_115.030
SRR6049657Rhizomagastrodiae_C368-T07_good_116.970
SRR6049658Rhizomagastrodiae_C368-T04_good_114.580
SRR6049659Rhizomagastrodiae_C368-T04_good_114.130
SRR6049660Rhizomagastrodiae_C368-T01_good_117.550
SRR6049661Rhizomagastrodiae_C368-T04_good_116.160
SRR6049662Rhizomagastrodiae_C368-T01_good_113.740
SRR6049663Rhizomagastrodiae_C368-T01_good_116.330
SRR6049664Rhizomagastrodiae_C368-T10_good_110.210
SRR6049665Rhizomagastrodiae_C368-T10_good_110.210
SRP279888GastroGastrodia elata tuber 11.38
JuvenJuvenile tuber17.92
Mother_GastroMother tuber of Gastrodia elata 12.07
Mother_JuvenMother tuber of Juvenile 9.76