Gene detail

Detail information of GWHGAAEX006616/evm.TU.scaffold_187.57

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG0239	Kinesin (KAR3 subfamily)
nr	gi\|743768492\|ref\|XP_010914521.1\|	PREDICTED: kinesin-4 [Elaeis guineensis]
Swissprot	tr\|O81635\|ATK4_ARATH	Kinesin-4
trEMBL	tr\|M0RT82\|M0RT82_MUSAM	Kinesin-like protein {ECO:0000256\|RuleBase:RU000394}
TAIR	AT5G27000	kinesin 4

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000184	1158576	1167152	-

Transcript Sequence
>GWHTAAEX006616 AGCATCATCAGGCACCCCTCTTTCCTAGAGGACAAATTTCTCTTTCTCCTCTCTTTTAAGGATTTGTCCAATATCACAAGGAAGAAGAATTATGACATCAGAGAGGAATTTGCCAATCACAATGGAATCCATAGCGGAGGATGTGATAAAGCAACACGGAACGAGGCCGAGCGACATCGACCTAGCCACCAGGAAGGTCGAGGAAGCAGCAACAAGAAGGTATGAAGCAGCCGCATGGCTAAGGAGGACAATAGGCGTAGTCGGAGCAAAGGATTTACCAGAGGAGCCTTCAGAGGAAGAATTTAGGATTGGGATCAGAAATGGAATAATCCTTTGTAATGTCATCAACAAAGTACAACCAGGGTCAATCCCAAAGGTCGTAGAAGTTCCTATTGATTCAAATGTCATTCCAGATGGTGCACCATTATCAGCATACCAACACTTTGAGAATGTGAGAAATTTTCTTGTGACACTTGAACATATGGGCATTCCCACCTTCGAGGCATCAGATCTTGAAAAGGGAGGAAAAAGCTCTAGGGTTGTGAACTCTGTTTTGGCTCTTAAATTGTACAACGACTACAAACAAGCAGGAAAATATAGCTCTTCAAAATTTGGGGGGATCACAAGGCCTTCCAACTTAACCAAACATTTTATAAGAAAAGGCTCTGATCCATTTATGAATTTCTTTTCCCAAACTCAAGCTTTGCCTGGAAAGTTATCTGATGATCTCCACTTTGAAGATGTTTTGAGTGGGGACCTTTTAATACAGTCAACAGGAATGAAAAGTTCTAATTCTCTCAGTATGATTCGTACAGCTTTATCTTACACAAAGTCTGAAGAAGTTCCACTTTTTGTGGATGCATTGCTACATAAAGTCATGCAAGAATATGAGAGGCGCATTCCCATCCAAAAGGAGATGATTGAGTTACAAGGAAATATTTCTAAAAGTAAAGAGGAAGAATCAACCATAAAGGAGAAGGCTAAAAATGAATTAAAACAAAGCAATGTGAAGCAACATGAGATGAGCCTCGAAGTGAGAGAACTAAAAGAAAGGATTAAAATAATGGAGCAGTTGAAACTAGAAGCAAAACCATTTCAAGAAAGGTTGCTGCCGCAACAGCATAAAGCAACAACAATTGAAAAAAATGATCTGAAAGAGATGGAAGAAAAGATATTGAATGACTTGGAAGAAAAGCCAAACATAGAGAGGCTTAAAAAGCAGCAAGCAAAGGAAATTAAACAAAAGGCATTAAAAGAGAATCTTATCAAGCAACAATTACTTGTTGATCATCAGCAAAAGCAGATTCAGGAATTAAAATGTGACCATCAATTTGCTAAGAGTAGCATGGAGTATTTGAAAACCTATTATTTGAAGGAATTTGATAATCTTGAAAATCAACTATGTGTCATAGCTAATGCTGCATCAGGATATCATAAGGTTTTAGAAGAAAATAGAAAACTATACAATCAAATACAAGATTTAAAAGGAAACATTAGGGTTTATTGTCGAGTGAGGCCATTTCTGGCTGGTCAAATGAGTAACATGAGCACTATTGTCCATATGGATGATCAAAATATTACCATATGTTCACCATTAAAAACTGGAAAGGATGCACGCCGAAATTTCACTTTCAACAAGGTCTATGGCCCCTCAGCAACTCAGGAAGAGATCTTCTTAGATACTCAACCTTTAATTCGATCTGTTCTTGATGGTTACAATGTTTGTATTTTTGCTTATGGCCAAACTGGTTCCGGAAAAACTCATACTATGAGTGGACCTGATGAACTCAACGAGAAAACTATGGGTGTAAACTATAGAGCATTGAATGATCTCTTCTACCTCTCAGAGCAGCGAAAGCATACTTTTACTTATGCAATCTCAGTTCAGATGGTTGAGATTTACAATGATCAAGGACTAAGTGTTCCTGGTGCAAACTTGGTTCCTGTTAGCTCAACTGAAGAGGTAATAGAAATAATGAATATGGGCCAAAAAAATCGTGCAGTGTGTTATACAGCCATGAATGATCGGAGCAGTCGATCTCATAGCTGTTTGAGCATCCATGTGCAAGGGAAGGAAAAAAGGAGTGGAACTGCAGTGAGAGGGAGCATGCACCTGGTGGACTTGGCAGGGAGCGAGCGGGTTGAGAAATCGGAGGTGAAGGGGGAGAGGCTGAGGGAAGCGCAGCACATAAACAAGTCGCTATCTGCTTTGGGCGACGTGATAGCTTGCCTGGCTCAGAAGAGCGCCCACGTGCCCTACCGCAACAGCAAGCTCACACAGCTGCTTCAGGACTCCCTCGGAGGGCAGGCGAAGACTCTGATGTTCGTTCATGTGAGTCCGGAGGTTGAGGCGCTCGGGGAGACGATCAGCACCCTCAAATTTGCAGAGCGGGTGGCCTCCGTTGAGCTAGGGGCGGCCAGGGTCAACAGAGACTGCGGCGAAGTCAGAGATCTCAAAGAACAGATAGCCGCTCTCAAAATGGAACTCGAAAGAAAGGGCTCAGCAGAACTTGAAGATGAGTTTGAAGAACTCCAGATTAAAAAACCAAACTATAAGCGTGCTGAAGACTTGCAAAGCTTGGAGGAGGAGACGAAATCTGCAGAGTGGATCGACAAAGCAGTTGTGAACAACAGCAAAGGCGGGGGTGGAGGAGACGAAGAAGCTGTGAAGGAAATGAGGAGAGTTTTCTATGCGGACGACTCCGATCATTCCTCTGCGGCGGGCGAATCCTCCAAGCTCAGGAGGCCGCAAGCGAAGGGTATAAAAAGCGTGGACGGAATTGGAAGGAACTTGAGCCATGCCAGCAGGAATGGGTCAACCCAGACGGTCGTCAAAACGAAGCGGTCTGGCGGCATCAAGAACAGTGGAAAATGA

Network for GWHGAAEX006616

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00307.30	CH	42	160	2.30E-15
PF16796.4	Microtub_bd	452	607	3.40E-44
PF00225.22	Kinesin	609	770	5.50E-60

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0007018	Biological Process	microtubule-based movement
GO:0003777	Molecular Function	microtubule motor activity
GO:0005524	Molecular Function	ATP binding
GO:0005515	Molecular Function	protein binding
GO:0008017	Molecular Function	microtubule binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	0.750
SRP064423	SRR2545915	Juvenile tuber	0.840
SRP108465	SRR5643513	five period of Gastrodia elata	1.130
	SRR5643514	five period of Gastrodia elata	1.910
	SRR5643515	five period of Gastrodia elata	1.480
	SRR5643524	five period of Gastrodia elata	1.800
	SRR5643525	five period of Gastrodia elata	2.340
	SRR5643528	five period of Gastrodia elata	2.710
	SRR5643658	five period of Gastrodia elata	1.980
	SRR5643659	five period of Gastrodia elata	1.230
	SRR5643660	five period of Gastrodia elata	1.360
	SRR5643661	five period of Gastrodia elata	1.010
	SRR5643662	five period of Gastrodia elata	1.340
	SRR5643663	five period of Gastrodia elata	1.220
	SRR5643664	five period of Gastrodia elata	1.310
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	0.710
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	1.330
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	1.480
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	0.400
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	1.080
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	0.950
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	1.000
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	1.180
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	0.920
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	0.870
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	1.290
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	1.290
SRP279888	Gastro	Gastrodia elata tuber	0.57
	Juven	Juvenile tuber	0.99
	Mother_Gastro	Mother tuber of Gastrodia elata	0.87
	Mother_Juven	Mother tuber of Juvenile	0.73