Detail information of GWHGAAEX006618/evm.TU.scaffold_187.59
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|146295422|ref|YP_001179193.1| | 4.00E-29 | galacturan 1,4-alpha-galacturonidase [Caldicellulosiruptor saccharolyticus DSM 8903] |
| nr | gi|672116074|ref|XP_008781188.1| | 0 | PREDICTED: polygalacturonase At1g48100-like [Phoenix dactylifera] |
| Swissprot | tr|Q949Z1|PGLR4_ARATH | 0 | Polygalacturonase At1g48100 (Precursor) |
| trEMBL | tr|M0TN25|M0TN25_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr8P06220_001} |
| TAIR | AT1G48100 | 0 | Pectin lyase-like superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000184 | 1213674 | 1216318 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX006618
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module2 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00295.16 | Glyco_hydro_28 | 172 | 487 | 1.10E-84 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GH28 |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005975 | Biological Process | carbohydrate metabolic process |
| GO:0004650 | Molecular Function | polygalacturonase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.440 |
| SRR2545915 | Juvenile tuber | 0.780 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 3.890 |
| SRR5643514 | five period of Gastrodia elata | 3.850 | |
| SRR5643515 | five period of Gastrodia elata | 6.380 | |
| SRR5643524 | five period of Gastrodia elata | 2.550 | |
| SRR5643525 | five period of Gastrodia elata | 1.040 | |
| SRR5643528 | five period of Gastrodia elata | 0.940 | |
| SRR5643658 | five period of Gastrodia elata | 0.770 | |
| SRR5643659 | five period of Gastrodia elata | 0.430 | |
| SRR5643660 | five period of Gastrodia elata | 0.630 | |
| SRR5643661 | five period of Gastrodia elata | 0.750 | |
| SRR5643662 | five period of Gastrodia elata | 0.930 | |
| SRR5643663 | five period of Gastrodia elata | 1.200 | |
| SRR5643664 | five period of Gastrodia elata | 0.400 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 3.800 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 6.900 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 3.590 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 1.650 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 0.770 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 0.690 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 3.720 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 1.390 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 20.980 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 8.010 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 4.990 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 4.990 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 1.25 |
| Juven | Juvenile tuber | 1.63 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 4.30 | |
| Mother_Juven | Mother tuber of Juvenile | 4.09 |