Detail information of GWHGAAEX006619/evm.TU.scaffold_187.60


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG26096.00E-125Cyclin D-interacting protein GCIP
nrgi|743784952|ref|XP_010921783.1|0PREDICTED: LOW QUALITY PROTEIN: pre-mRNA-splicing factor syf2 [Elaeis guineensis]
trEMBLtr|M0S063|M0S063_MUSAM0Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr1P15550_001}
TAIRAT2G168606.00E-125GCIP-interacting family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000018412171751258305-
Transcript Sequence

Network for GWHGAAEX006619

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF08231.11SYF22023492.20E-38
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K12868SYF2 Spliceosome map03040

Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms206.890
SRR2545915Juvenile tuber120.670
SRP108465SRR5643513five period of Gastrodia elata173.370
SRR5643514five period of Gastrodia elata150.380
SRR5643515five period of Gastrodia elata153.250
SRR5643524five period of Gastrodia elata136.080
SRR5643525five period of Gastrodia elata122.300
SRR5643528five period of Gastrodia elata121.900
SRR5643658five period of Gastrodia elata116.310
SRR5643659five period of Gastrodia elata240.210
SRR5643660five period of Gastrodia elata235.450
SRR5643661five period of Gastrodia elata211.730
SRR5643662five period of Gastrodia elata247.500
SRR5643663five period of Gastrodia elata227.720
SRR5643664five period of Gastrodia elata248.630
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_1185.540
SRR6049655Rhizomagastrodiae_C368-T10_good_1143.300
SRR6049656Rhizomagastrodiae_C368-T07_good_1170.280
SRR6049657Rhizomagastrodiae_C368-T07_good_1220.180
SRR6049658Rhizomagastrodiae_C368-T04_good_1217.750
SRR6049659Rhizomagastrodiae_C368-T04_good_1262.510
SRR6049660Rhizomagastrodiae_C368-T01_good_1193.430
SRR6049661Rhizomagastrodiae_C368-T04_good_1202.180
SRR6049662Rhizomagastrodiae_C368-T01_good_1132.620
SRR6049663Rhizomagastrodiae_C368-T01_good_1156.060
SRR6049664Rhizomagastrodiae_C368-T10_good_1149.560
SRR6049665Rhizomagastrodiae_C368-T10_good_1149.560
SRP279888GastroGastrodia elata tuber 155.83
JuvenJuvenile tuber147.72
Mother_GastroMother tuber of Gastrodia elata 76.33
Mother_JuvenMother tuber of Juvenile 93.46