Gene detail

Detail information of GWHGAAEX006623/evm.TU.scaffold_187.64

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|108762272\|ref\|YP_629357.1\|	1.00E-125	ABC transporter permease [Myxococcus xanthus DK 1622]
KOG	KOG0055	0	Multidrug/pheromone exporter, ABC superfamily
nr	gi\|743866223\|ref\|XP_010905014.1\|	0	PREDICTED: ABC transporter B family member 11-like isoform X1 [Elaeis guineensis]
Swissprot	tr\|Q9FWX7\|AB11B_ARATH	0	ABC transporter B family member 11
trEMBL	tr\|A0A061DZI3\|A0A061DZI3_THECC	0	ATP binding cassette subfamily B4 isoform 1 {ECO:0000313\|EMBL:EOX95438.1}
TAIR	AT1G02520	0	P-glycoprotein 11

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000184	1334327	1349927	+

Transcript Sequence
>GWHTAAEX006623 ATGAATCATTGTCTATTTATTTCTCTTACTTTTGCCCCAATTTCTATTAAAGCTTTCTAAACAAAATTCATCATATAAATTGTTTCTGCCGTTTCAATTTCTTCTGAAAAAAAAAGGGAATCCAATCTGCAGCAGCAACAGAGGTCTAGCTGAACAGAACCACAAACACCACCAATCAGGTAAGAAAATAGATATAGTTTTGATCAAGAAAATCAAGTCTTTGGCCGACTAGCTCCGAATCACTAAGCGTATTTACCGTCAGAAATGAAACTATGGCAAGATGATGATGGTAAATCTAGCTCTTGGTGATATCCTCAGAGGCACTGCAAATTCAGGGATTCACTGACTTGTACAAGCTCATATTCACTATTTAATTATGAGATTCACAGCTAGGTGCGAAAAAAAATAAGAGAAAGCAGGCATAAAATAGAAAGACAAGATATTCACTGTTGATAAGCACGTTATAGCGTAGATAGCATAGAAGATATTGATATCTTAAAAGTAAAAAAATTTAATGGCCAGCTCAAGCAAACCAGAATTGAAAGAAGAAAGGGGCAATGAAATTCAGGAAGATGACAAATTTAACAGCACTAGTGAAAAAAGCAATGAAGGCAACAGCATGGTTCCATTTTACAAGTTGTTCTCCTATGCCGATACCATGGATGTTGCTCTAATGATCATAGGCTCAGCTGGTGCAATAGCAAACGGACTCGTGCTCCCACTCACCACACTTTTCTTTGGAAATTTGATTAATTCTTTTGGAGAAACTAAAGACATTCAAAACGTGGTGAATCAAGTTTCCAAGGAAGCACTCAAATTCATCTACTTGGCGCTTGGAGCAGGCATAGCTTCTTTCCTCCAGGCATCCTGCTGGATGAATACAGGGGAGAGACAAGCGGAAAGACTAAGAAACTTGTATCTGCGGGCCATTTTAAGGCAAGAGATTGCCTTCTTCGACAAGGAAACTAACACTGGAGAAATAGTTGCAAAGGTGTCCGGTGATTCAGTTATCATACAAGATTCCATGGGTGAAAAGGTTGGCCAATTTATTCAGTTAATGTCAACATTCTTTGGAGGTTTTATCATAGCATTTGTCCAAGGTTGGCTTCTCGCTCTTGCTATGCTGTCCACTATTCCTCCACTTGTATTTGCCGGTGCAGTTATTTCTAAAGTTATAGCAAAGATGGCATCACAAGGGCAGACAGCCTATGCAGCAGCAGCAGATCTTGTAGAAGAAACAATTAGTGATATTAGAACAGTAGCATCTTTTACTGGGGAGAAACAGGCTGTAGAAAAATATTGTCAATCTCTGAAACAATCATATAGCACAAGTGTTCAAGAGGGACTTGTGGCAGGAATAGGGCTTGGTACCGCTATGTTACTCTTCTTCTGTGGATACGCACTTGGCATGTGGTACGGGTCTAAGCTGATACTTGAAAAAGGCTACACAGGTGGTGATGTATTCAATGTCATCTTTGCAGTTCTTACCAGCTCTCTATCTTTGGGCCAGGCGACGCCATGCATAAGTTCCTTCATAGCTGGGCAGGCAGCAGCTTTCAAACTGTTTGAGACAATAAATAGAAAACCAGAAATAGATGCAGAAAGTAGCGAAGGAATGACAACTGAAAATATCCAAGGAGATATTGAATTTAAGAATATCAGTTTCAGTTATCCAACAAGACCGACCGAACAAATATTCAAAGACTTGTCCATTGTCATAAAAAGTAGCACCACTGTAGCGTTAGTTGGGGAAAGCGGGAGCGGGAAATCAACGGTTATTAGTTTGATAGAAAGGTTCTATGATCCACAAGCTGGTGAAGTGCTTATAGACGGTATCAATCTCAAAGACTACCAGCTAAGATGGATCAGAGGAAAGATAGGCCTCGTTAGCCAGGAGCCTGCCCTGTTTGCTTGCAGCATTAGAGACAACATAGCTTATGGAAAGGAAGGTGCAACCATTGAAGAGATAAAAAATGCAGCTGAACTAGCAAATGCATCTACTTTCATAGACAAGCTTCCTCAGGGAATTGACACAATGGTAGGAGAGTATGGAACTCAACTATCAGGAGGACAGAAACAAAGAGTGGCTATTGCAAGAGCCATCTTAAAAGATCCACGAATTCTGCTTCTTGATGAAGCCACAAGTGCACTAGACGCAGAGTCGGAGCTATCGTTGCAAAAGGCACTCGAGAAAGTTATGCAAACACGAACAACTGTCATTGTTGCTCATCGAATGAGTACTATTAGGAATGCGGACACCATAATTGTATTAAATAAAGGTTCAATTGTTCAAAAAGGTTCACACAAGGAGCTGCTGAAGAATAAAGGGGGAGCATATTCACAGCTTATACACTTGCAGGAAATGAAGCAAGATTCAGTACTTAAAATTCAAACAGAGATAAAAAGGGTTGTTAGCTTAAGGGAAGCCGGTAGACAAGCAAGTCAGAGGAGCGCTTTCCCTCATTCCATTAGTCGAGGAAGATCTCTGGGTCACCGCCATTCCTTTTCAATGCCATTTATTTTGCCCCTAGGACTTGAAATTCAAGATAACTCAATGGAATCAGATATTCATGAGGTAACATCCACCCACAAACAAGAACTGCCATTAGTGCGACTTGCCTATCTTAACAAGCCGGAGCTCCCAATCTTCATAATTGGAGTAATTGCTGCTGTTTTTAATGGGATTATTCTGCCCATATTCGGTGTTCTCTTATCCGATATGATAAAAACGTTTTACCAGCCAGCAGATAAACTAAAGAAAGATTCAAAATTTTATGCAATTATGTTCATAGCCCTTGGTCTACTGTCTTTGTTAGCAATGCCGGCTAGATCATACTTGTTTGCAGTAGCTGGGTCTCGATTGATCAGAAGAATCAGATTAATCACATTTGAGAAGGTAGTTAACATGGAGATGGCATGGTTTGATGATTCAAAAAACTCAAGTGGAGCAATTGAAGCGAGACTCTCAGTGGATGCTGCTGCATTTAGAAGTCTTGTGGGTGACAATCTGGCACTGCTGGTTCAGAATATTGCAACTTTGTCTATCGGTTTAGGCATTGCCTTTGCTGCAAATTGGCAGCTTTCATTCATAATTCTGGGTTTGGTTCCTCTAATAGGCATAAATTCATGGGCACAGATCGTGTTTATGAAAGGGTTTAGTGCTAATGCAAAGATAATATATGAAAAAGCAAGTGAAGTGGCAAATGATGCTGTGGTAAATATAAGAACAGTAGCTTCATTCACCGCTGAGGCAAAGATAATGGAAATATTCAAGGAGAGATGCGAAAGCCCAAAGAAGACCAGAATTAGGCAGGCGGTTGTTAATGGGACCGGCATTGGGATCTCTTTTTTTCTACTATTCTGTGTATACGCAGCTAGTTTCTATGCGGGAGCGAGACTTGTTCAGGATGGGAAGACAACATTTGGGAAAGTTTTCAGAGTTTTCTTTGCACTTGCAATGGCAGCTATTGGAATCTCCCAATCTAGTTCGGTAGCACCAGATTCTAACAAAGCCAGAAGTGCTGCTGCTTCTGTATTTGAAATTTTAGACCGCCAATCTAAAATAGATGCAAGTGATGACTCGGGTACAAAGCTGGAGCAGCTTAGAGGCAACATAGAGTTCCAGCAAGTCAAATTTTGTTACCCCACCAGGAAAGAAGCCCCAGTTCTACAGAACTTTTGTTTGTCTATTAAATCTGGAAAGACAATTGCACTTGTTGGAGAGAGTGGATGTGGAAAGTCAACAACAATAGCATTGTTGCAAAGGTTTTACGATCCTGATTCAGGTCACATATTGCTAGATGGAATCGACATCAAAAGATTTCAACTGAAGTGGTTAAGGCAGCAGATGGGTTTAGTGAGTCAGGAACCATCACTGTTCAATGACACGATTCGAGCTAATATTGCTTATGGCAAAGAAGGAAATGCCACGGAGGAAGAGATGATAGCTGCATCGGAATTAGCCAATGCCCACAAGTTTATAAGTTCCCTCCATAAGGGGTACGACACACTTGTGGGTGAAAAAGGCACTCAACTGTCAGGGGGACAAAAACAAAGAATAGCGATTGCACGTTCAATAGTGAAGGAACCAAAAATATTACTGCTTGATGAAGCTACTAGTGCACTTGATGCAGAATCTGAGCTGGTGGTTCAAGAAGCATTAAACAAGGTGATAGTGAATCGAACCACAATCGTCATTGCCCACAGGTTTTCTACCATAAGAAATGCTGATTTAATCTGCGTAATAAAGGGTGGGGTGATAGCGGAAAAAGGAACCCATGATATGATGATCAATAATGGTGGACTCTACGCATCCTTAGCAGCACTTCATTCAAGAGGAACTTCATAGTTATCTTCTGTAAGACTTCAGAAAACTGAAGGAAAGCCGATTTTGTTTTTTTGTTTTCCTTCTAACAAACAAGCTCCCGTCCTTACTCTAATCTGATATAACTAATTATAATGTAATGCTCATGAGTGTAACATAACTTTACAAAGATAAGCGGTCCTTAAGTGAAGATTACTGATGAAAATAGATAATAAAAGAATTTTTAGTTTGCAAGCC

Network for GWHGAAEX006623

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module2

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00664.22	ABC_membrane	55	327	2.90E-63
PF00005.26	ABC_tran	396	544	4.80E-34
PF00664.22	ABC_membrane	712	983	9.10E-57
PF00005.26	ABC_tran	1052	1202	1.10E-35

Protein Sequence

>GWHPAAEX006623
MASSSKPELKEERGNEIQEDDKFNSTSEKSNEGNSMVPFYKLFSYADTMDVALMIIGSAGAIANGLVLPLTTLFFGNLINSFGETKDIQNVVNQVSKEALKFIYLALGAGIASFLQASCWMNTGERQAERLRNLYLRAILRQEIAFFDKETNTGEIVAKVSGDSVIIQDSMGEKVGQFIQLMSTFFGGFIIAFVQGWLLALAMLSTIPPLVFAGAVISKVIAKMASQGQTAYAAAADLVEETISDIRTVASFTGEKQAVEKYCQSLKQSYSTSVQEGLVAGIGLGTAMLLFFCGYALGMWYGSKLILEKGYTGGDVFNVIFAVLTSSLSLGQATPCISSFIAGQAAAFKLFETINRKPEIDAESSEGMTTENIQGDIEFKNISFSYPTRPTEQIFKDLSIVIKSSTTVALVGESGSGKSTVISLIERFYDPQAGEVLIDGINLKDYQLRWIRGKIGLVSQEPALFACSIRDNIAYGKEGATIEEIKNAAELANASTFIDKLPQGIDTMVGEYGTQLSGGQKQRVAIARAILKDPRILLLDEATSALDAESELSLQKALEKVMQTRTTVIVAHRMSTIRNADTIIVLNKGSIVQKGSHKELLKNKGGAYSQLIHLQEMKQDSVLKIQTEIKRVVSLREAGRQASQRSAFPHSISRGRSLGHRHSFSMPFILPLGLEIQDNSMESDIHEVTSTHKQELPLVRLAYLNKPELPIFIIGVIAAVFNGIILPIFGVLLSDMIKTFYQPADKLKKDSKFYAIMFIALGLLSLLAMPARSYLFAVAGSRLIRRIRLITFEKVVNMEMAWFDDSKNSSGAIEARLSVDAAAFRSLVGDNLALLVQNIATLSIGLGIAFAANWQLSFIILGLVPLIGINSWAQIVFMKGFSANAKIIYEKASEVANDAVVNIRTVASFTAEAKIMEIFKERCESPKKTRIRQAVVNGTGIGISFFLLFCVYAASFYAGARLVQDGKTTFGKVFRVFFALAMAAIGISQSSSVAPDSNKARSAAASVFEILDRQSKIDASDDSGTKLEQLRGNIEFQQVKFCYPTRKEAPVLQNFCLSIKSGKTIALVGESGCGKSTTIALLQRFYDPDSGHILLDGIDIKRFQLKWLRQQMGLVSQEPSLFNDTIRANIAYGKEGNATEEEMIAASELANAHKFISSLHKGYDTLVGEKGTQLSGGQKQRIAIARSIVKEPKILLLDEATSALDAESELVVQEALNKVIVNRTTIVIAHRFSTIRNADLICVIKGGVIAEKGTHDMMINNGGLYASLAALHSRGTS

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K05658	ABCB1, CD243	ABC transporters	map02010
K05658	ABCB1, CD243	Bile secretion	map04976

Gene Ontology

GO term	Ontology	Name
GO:0055085	Biological Process	transmembrane transport
GO:0042626	Molecular Function	ATPase activity, coupled to transmembrane movement of substances
GO:0016887	Molecular Function	ATPase activity
GO:0005524	Molecular Function	ATP binding
GO:0016021	Cellular Component	integral component of membrane

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	0.860
SRP064423	SRR2545915	Juvenile tuber	0.160
SRP108465	SRR5643513	five period of Gastrodia elata	12.930
	SRR5643514	five period of Gastrodia elata	8.540
	SRR5643515	five period of Gastrodia elata	3.700
	SRR5643524	five period of Gastrodia elata	4.850
	SRR5643525	five period of Gastrodia elata	0.140
	SRR5643528	five period of Gastrodia elata	0.030
	SRR5643658	five period of Gastrodia elata	0.060
	SRR5643659	five period of Gastrodia elata	0.030
	SRR5643660	five period of Gastrodia elata	0.040
	SRR5643661	five period of Gastrodia elata	0.060
	SRR5643662	five period of Gastrodia elata	0.040
	SRR5643663	five period of Gastrodia elata	0.110
	SRR5643664	five period of Gastrodia elata	0.070
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	12.510
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	19.520
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	28.240
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	6.050
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	15.640
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	14.500
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	10.800
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	7.940
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	20.180
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	27.970
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	33.200
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	33.200
SRP279888	Gastro	Gastrodia elata tuber	0.12
	Juven	Juvenile tuber	0.57
	Mother_Gastro	Mother tuber of Gastrodia elata	0.37
	Mother_Juven	Mother tuber of Juvenile	0.72