Gene detail

Detail information of GWHGAAEX006625/evm.TU.scaffold_187.66

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|743841034\|ref\|XP_010937427.1\|	4.66E-167	PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 isoform X2 [Elaeis guineensis]
Swissprot	tr\|Q689D6\|RPD1_ARATH	1.00E-22	Protein ROOT PRIMORDIUM DEFECTIVE 1
trEMBL	tr\|K3ZTS1\|K3ZTS1_SETIT	2.00E-147	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Si030001m}
TAIR	AT4G08940	6.00E-115	Ubiquitin carboxyl-terminal hydrolase family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000184	1424804	1426852	-

Transcript Sequence
>GWHTAAEX006625 GGGAGACAAATAGGATAGTATATCATTCTTCATATTAAATATCAGAAATATTTAATATTTAATATTTCAAAATATTTAATATTTTGAAACATCGATAGAGGATGCCGAACTAACAAAACGCAGGCGCAAGTGAAGCTGTAAAACCCTAAACCATGGCGTTGCGCCTTGCGCACAAGAAGTCTTCCATTCCCACAGCATCCTTCTTTCTCACTTGCTCAAACCCTATCCGGAATTGCAATTCCTTCTCTCCCTCCTCCATTCTCCCATTATTCAACTGCAAGCGCCGGAAGAAGCTTCGCAAAAAGCTCTGCAGCCCCCGTGTGAAGCCGATCGCTGCGTCCACACCCCGCCCTTTAGCAGCCCTTGATGCCATCACCCACCGTGACTCCCAATTCCGCTTCCTCTCACGCACGCGTTGCTTCCTTTCCCGCCAACCCCTACACCTCCTTCCACTCTCCGCCGCCGGCAAGCTTCACCACGAGCTTGGCTTTCCACGCGGCCGTAAGCCCTCGCGGTTCGCATCCCGACACCCTCTTCTCCTCCGCGTGGTCCATCACCCGGCTCCTTTCGGTCCCCTTCATCTTTCCTTCACTCCCCTAATGGAATCCTTCTTATCGGAGGAGCAGTTGATCTTCAACACTTCGGAAACCGACCGTGTGAATGCGATTCGCAAGCTTCTCATGATCTCCTCGGGCCACCGTGTTCCCCTCGCCAAGCTGTTTCACTGCCGCCGCGTTCTTGGCCTTCCCGATGACTTCCGCGACCGCGTGCGCAAGTACCCCGACTTCTTCCGTGTTGCCGTGGATCCTGACGGCCGTCACGTCCTTGAGCTCGCGGAATGGGATCCTGCCCTTGCCATCAGCGCCTTGGAGCGCGATTACGTTGCAGATGAGCACCGTGTCCGGCGCACCTTCAAATTTGAAGTTCCTTATGGCAAGGATTTAGGTTTAGATGAGGACAGTGAGAGAAAGATGAATTGCTTGACGACACTGCCGTTGATTTCGCCGTATGCTGATGGCTCTGAGATGAAACCATGGACTGTGGAGGCGGAGAAGTACAGGATTGGGGTGATTCACGAGTTTTTGAGCTTGACTGTGGAAAAAAGGGCGTATATTCATCATATAGTAGAGTTTAAGGAGGAGTTTTGCCTTACCAGGCATACTTACCACATGCTTTTAAAGCAGCCGCGGGCATTTTATTTGGCAGGGACTGAGATGAATTGGGCTGTTTTCTTGAGAGATGCGTATAATGTGGACGGAACATTGATAGAGAAGGACCCTTTGGTTCTGTTCGAGGAGAAGTTGAGAAGATATGCTCTCATGAAGGAAGGGGAGGAAGAGGTTGAGGGTGGATTTTCTGGAGCTATTATAGTTTGAATTGTTGTGGAATTTCAAACTTCTATCTTGTAGTTAGAAATATTGGAGAATTTTGCTTCCAGGGATAAAATTGATTTCAGAAAGAGACAACCCTTTGGATGGTAAAATTGCATAGAATGTTGTGGATTACACGAGTTCATTAAATTAACACCCAGCCTTTAAAAGTTATTGCTTTTGTGATGAGTGTTTGATGAGTCAAGGGTCTGCGATAATTCTTGTGCTTTAAACAATGATTCGTCAGGCATGCAAGGTGTTATTCTTTGACAGAAAACTTATGCTTATGTATATAACATTTCTTTTGTAGTTGTGCTTTAAAATGCTAGTTATTTTATGATAGGGGGCGCTTGGTTGTATGTCATTTGAAATTCTATTGAGACAATATAGTATATTATCAAATTTTACTATCTATTTGGTTTAGTGTTAATGTTTTCACAGATAACATTGCTATTAAATTATGTTGCACTAAAAGTGAAATTACTTTACAGAAAGTATTAAGGAAGATTATGAGGGAGCTAAAAGAGAACAAATTAAACTGTCAGGCAGAATTAACAATCTACTACCAAGCAAAGTGAATAGTTGCGACTTACCCAATTTTGTTACACTTTGTTAAGTGAACTACTTTTATTGTAGAAACAAACCAAAACAAGCATTGCATGAACAAACTCAAACACAT

Network for GWHGAAEX006625

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF11955.7	PORR	70	392	1.90E-91

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	3.730
SRP064423	SRR2545915	Juvenile tuber	2.690
SRP108465	SRR5643513	five period of Gastrodia elata	2.870
	SRR5643514	five period of Gastrodia elata	3.290
	SRR5643515	five period of Gastrodia elata	3.000
	SRR5643524	five period of Gastrodia elata	2.740
	SRR5643525	five period of Gastrodia elata	2.350
	SRR5643528	five period of Gastrodia elata	1.390
	SRR5643658	five period of Gastrodia elata	0.960
	SRR5643659	five period of Gastrodia elata	6.870
	SRR5643660	five period of Gastrodia elata	6.790
	SRR5643661	five period of Gastrodia elata	7.130
	SRR5643662	five period of Gastrodia elata	7.190
	SRR5643663	five period of Gastrodia elata	6.670
	SRR5643664	five period of Gastrodia elata	6.810
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	3.480
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	6.030
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	3.790
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	2.660
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	2.760
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	2.700
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	4.310
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	2.920
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	5.090
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	4.040
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	4.160
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	4.160
SRP279888	Gastro	Gastrodia elata tuber	6.39
	Juven	Juvenile tuber	3.97
	Mother_Gastro	Mother tuber of Gastrodia elata	2.87
	Mother_Juven	Mother tuber of Juvenile	2.44