Detail information of GWHGAAEX006628/evm.TU.scaffold_187.70


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|428775476|ref|YP_007167263.1|3.00E-134protoporphyrinogen oxidase [Halothece sp. PCC 7418]
KOGKOG12760Protoporphyrinogen oxidase
nrgi|695073498|ref|XP_009383920.1|0PREDICTED: protoporphyrinogen oxidase, chloroplastic [Musa acuminata subsp. malaccensis]
Swissprottr|P55826|PPOC_ARATH0Protoporphyrinogen oxidase 1, chloroplastic (Precursor)
trEMBLtr|M0RSM0|M0RSM0_MUSAM0Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr11P15900_001}
TAIRAT4G016900Flavin containing amine oxidoreductase family

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000018414581021488536+
Transcript Sequence

Network for GWHGAAEX006628

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01593.23Amino_oxidase1055661.60E-78
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K00231PPOX, hemY Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Porphyrin and chlorophyll metabolismmap00860

Gene Ontology

GO term OntologyName
GO:0055114Biological Processoxidation-reduction process
GO:0006779Biological Processporphyrin-containing compound biosynthetic process
GO:0004729Molecular Functionoxygen-dependent protoporphyrinogen oxidase activity
GO:0016491Molecular Functionoxidoreductase activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms57.590
SRR2545915Juvenile tuber53.170
SRP108465SRR5643513five period of Gastrodia elata41.720
SRR5643514five period of Gastrodia elata40.300
SRR5643515five period of Gastrodia elata40.360
SRR5643524five period of Gastrodia elata38.740
SRR5643525five period of Gastrodia elata31.190
SRR5643528five period of Gastrodia elata23.700
SRR5643658five period of Gastrodia elata30.730
SRR5643659five period of Gastrodia elata47.080
SRR5643660five period of Gastrodia elata55.740
SRR5643661five period of Gastrodia elata46.010
SRR5643662five period of Gastrodia elata51.640
SRR5643663five period of Gastrodia elata59.220
SRR5643664five period of Gastrodia elata48.990
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_181.720
SRR6049655Rhizomagastrodiae_C368-T10_good_179.120
SRR6049656Rhizomagastrodiae_C368-T07_good_178.440
SRR6049657Rhizomagastrodiae_C368-T07_good_180.650
SRR6049658Rhizomagastrodiae_C368-T04_good_194.520
SRR6049659Rhizomagastrodiae_C368-T04_good_199.300
SRR6049660Rhizomagastrodiae_C368-T01_good_189.010
SRR6049661Rhizomagastrodiae_C368-T04_good_191.170
SRR6049662Rhizomagastrodiae_C368-T01_good_197.000
SRR6049663Rhizomagastrodiae_C368-T01_good_199.470
SRR6049664Rhizomagastrodiae_C368-T10_good_168.050
SRR6049665Rhizomagastrodiae_C368-T10_good_168.050
SRP279888GastroGastrodia elata tuber 82.18
JuvenJuvenile tuber64.96
Mother_GastroMother tuber of Gastrodia elata 51.88
Mother_JuvenMother tuber of Juvenile 43.65