Detail information of GWHGAAEX006629/evm.TU.scaffold_187.72
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 0 | FOG: PPR repeat |
| nr | gi|743768670|ref|XP_010914611.1| | 0 | PREDICTED: pentatricopeptide repeat-containing protein At5g65560-like [Elaeis guineensis] |
| Swissprot | tr|Q9LSL9|PP445_ARATH | 0 | Pentatricopeptide repeat-containing protein At5g65560 |
| trEMBL | tr|F6HAZ8|F6HAZ8_VITVI | 0 | Putative uncharacterized protein {ECO:0000313|EMBL:CCB49434.1} |
| trEMBL | tr|F6HAZ8|F6HAZ8_VITVI | 3.00E-35 | Putative uncharacterized protein {ECO:0000313|EMBL:CCB49434.1} |
| TAIR | AT5G65560 | 0 | Pentatricopeptide repeat (PPR) superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000184 | 1488905 | 1542281 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX006629
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF13041.5 | PPR_2 | 183 | 232 | 1.80E-16 |
| PF13041.5 | PPR_2 | 254 | 302 | 8.30E-13 |
| PF13041.5 | PPR_2 | 324 | 372 | 2.30E-17 |
| PF13041.5 | PPR_2 | 393 | 442 | 4.00E-16 |
| PF13041.5 | PPR_2 | 464 | 511 | 9.40E-11 |
| PF01535.19 | PPR | 538 | 566 | 0.17 |
| PF13041.5 | PPR_2 | 568 | 615 | 3.10E-12 |
| PF13041.5 | PPR_2 | 689 | 738 | 1.90E-15 |
| PF01535.19 | PPR | 763 | 785 | 0.0063 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 4.480 |
| SRR2545915 | Juvenile tuber | 4.380 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 3.860 |
| SRR5643514 | five period of Gastrodia elata | 3.970 | |
| SRR5643515 | five period of Gastrodia elata | 4.420 | |
| SRR5643524 | five period of Gastrodia elata | 3.550 | |
| SRR5643525 | five period of Gastrodia elata | 3.860 | |
| SRR5643528 | five period of Gastrodia elata | 3.190 | |
| SRR5643658 | five period of Gastrodia elata | 3.350 | |
| SRR5643659 | five period of Gastrodia elata | 4.900 | |
| SRR5643660 | five period of Gastrodia elata | 4.730 | |
| SRR5643661 | five period of Gastrodia elata | 3.890 | |
| SRR5643662 | five period of Gastrodia elata | 4.200 | |
| SRR5643663 | five period of Gastrodia elata | 3.130 | |
| SRR5643664 | five period of Gastrodia elata | 3.610 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 3.420 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 4.540 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 4.000 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 3.590 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 3.510 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 3.790 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 3.020 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 4.000 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 4.310 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 4.340 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 3.820 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 3.820 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 3.11 |
| Juven | Juvenile tuber | 2.34 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 4.65 | |
| Mother_Juven | Mother tuber of Juvenile | 4.22 |