Detail information of GWHGAAEX006636/evm.TU.scaffold_187.78
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|336117058|ref|YP_004571825.1| | 1.00E-25 | serine/threonine protein kinase [Microlunatus phosphovorus NM-1] |
| KOG | KOG1187 | 4.00E-180 | Serine/threonine protein kinase |
| nr | gi|720008261|ref|XP_010258573.1| | 0 | PREDICTED: protein kinase 2B, chloroplastic-like isoform X2 [Nelumbo nucifera] |
| Swissprot | tr|O49840|APK2B_ARATH | 1.00E-180 | Protein kinase 2B, chloroplastic (Precursor) |
| trEMBL | tr|D7TNC2|D7TNC2_VITVI | 0 | Putative uncharacterized protein {ECO:0000313|EMBL:CBI31995.3} |
| TAIR | AT2G02800 | 4.00E-180 | protein kinase 2B |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000184 | 1602347 | 1605050 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX006636
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module6 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00069.24 | Pkinase | 88 | 383 | 8.80E-43 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Protein Kinases Family | RLK-Pelle_RLCK-VIIa-2 |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006468 | Biological Process | protein phosphorylation |
| GO:0005524 | Molecular Function | ATP binding |
| GO:0004672 | Molecular Function | protein kinase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 49.100 |
| SRR2545915 | Juvenile tuber | 14.740 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 50.610 |
| SRR5643514 | five period of Gastrodia elata | 28.380 | |
| SRR5643515 | five period of Gastrodia elata | 34.840 | |
| SRR5643524 | five period of Gastrodia elata | 41.700 | |
| SRR5643525 | five period of Gastrodia elata | 11.210 | |
| SRR5643528 | five period of Gastrodia elata | 18.000 | |
| SRR5643658 | five period of Gastrodia elata | 6.310 | |
| SRR5643659 | five period of Gastrodia elata | 18.600 | |
| SRR5643660 | five period of Gastrodia elata | 18.310 | |
| SRR5643661 | five period of Gastrodia elata | 21.480 | |
| SRR5643662 | five period of Gastrodia elata | 11.300 | |
| SRR5643663 | five period of Gastrodia elata | 9.330 | |
| SRR5643664 | five period of Gastrodia elata | 13.650 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 62.420 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 68.530 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 69.100 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 73.620 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 79.390 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 96.440 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 88.490 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 69.880 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 69.260 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 83.270 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 70.160 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 70.160 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 15.59 |
| Juven | Juvenile tuber | 73.47 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 54.32 | |
| Mother_Juven | Mother tuber of Juvenile | 57.69 |