Detail information of GWHGAAEX006637/evm.TU.scaffold_187.79
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|182412686|ref|YP_001817752.1| | 1.00E-31 | major facilitator transporter [Opitutus terrae PB90-1] |
| KOG | KOG0637 | 0 | Sucrose transporter and related proteins |
| nr | gi|743773341|ref|XP_010917011.1| | 0 | PREDICTED: sucrose transport protein SUT3 isoform X1 [Elaeis guineensis] |
| Swissprot | tr|Q10R54|SUT1_ORYSJ | 0 | Sucrose transport protein SUT1 |
| trEMBL | tr|M0RJG0|M0RJG0_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr10P18850_001} |
| TAIR | AT2G02860 | 0 | sucrose transporter 2 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000184 | 1610018 | 1621843 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX006637
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module6 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF13347.5 | MFS_2 | 56 | 131 | 7.90E-09 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0015770 | Biological Process | sucrose transport |
| GO:0008515 | Molecular Function | sucrose transmembrane transporter activity |
| GO:0005887 | Cellular Component | integral component of plasma membrane |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 54.030 |
| SRR2545915 | Juvenile tuber | 8.230 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 76.990 |
| SRR5643514 | five period of Gastrodia elata | 60.110 | |
| SRR5643515 | five period of Gastrodia elata | 72.890 | |
| SRR5643524 | five period of Gastrodia elata | 58.710 | |
| SRR5643525 | five period of Gastrodia elata | 111.030 | |
| SRR5643528 | five period of Gastrodia elata | 131.650 | |
| SRR5643658 | five period of Gastrodia elata | 219.060 | |
| SRR5643659 | five period of Gastrodia elata | 6.560 | |
| SRR5643660 | five period of Gastrodia elata | 6.000 | |
| SRR5643661 | five period of Gastrodia elata | 10.690 | |
| SRR5643662 | five period of Gastrodia elata | 9.180 | |
| SRR5643663 | five period of Gastrodia elata | 5.290 | |
| SRR5643664 | five period of Gastrodia elata | 9.160 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 145.110 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 73.670 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 112.710 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 287.750 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 478.520 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 632.730 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 310.640 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 405.180 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 108.540 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 120.140 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 74.450 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 74.450 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 14.79 |
| Juven | Juvenile tuber | 11.18 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 372.85 | |
| Mother_Juven | Mother tuber of Juvenile | 205.17 |