Gene detail

Detail information of GWHGAAEX006643/evm.TU.scaffold_188.7

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG0048	6.00E-65	Transcription factor, Myb superfamily
nr	gi\|695024402\|ref\|XP_009399414.1\|	2.16E-65	PREDICTED: myb-related protein Zm1-like [Musa acuminata subsp. malaccensis]
Swissprot	tr\|P20024\|MYB1_MAIZE	7.00E-67	Myb-related protein Zm1
trEMBL	tr\|M0S900\|M0S900_MUSAM	8.00E-67	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr2P18090_001}
TAIR	AT1G79180	6.00E-65	myb domain protein 63

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000191	160847	163807	-

Transcript Sequence
>GWHTAAEX006643 CTAATTGAATGATAATTATGATGCGATTAAGCTAAAAATTCGGCTAAATAACAGCCTATGATTGTTACAAAAAGCATGTATATGATGAGCAAATAAAAAAAAACAAATAAAACCTACATGTAAGTACAATCACAACATAAAGCAAGAGAGTTATGTGGTTCGTTGCTAACACCTACATCCACGGGAATGCAATCAGAGAAATTTCATTATATAGAGGAGATTACAAATATTTAAGGTTAACAAACTCTTACACAATACTCTTAGGAGCTTTCTTCTTCTTTGATATAGCAACCACCACATACACAACCCTAATGGAGGCTATCAAATTTTCAGATTTTCCACTTCTTAGCCCTAAAAAAGGCTTAGATAATATTTATAGACGGCTCATATTCGTGCTTGCTGAGCCGCGGGAGCCACGCTCACTGTTTGGGTGTCCAGGTGCTGTGGCGCGCTATGCCGCTTGCCTCTCGGGTGACCAAACTGACGCTAGGTGATATGGCGTGTCCCGACGCCTTCCAAAGCGCACTGTGGCGCGCTTCCAAAACTACTCTTAATCAACAAAAGTCATTTGAAAAAGGATCGTTGGAAGCGTTTAAGCAAATAAGCACTGATACAATGTAAAAGTTGAAGAGGAGAATGATAAAAAGTAGAGGTATTCAAAGTACATCAAAGTACATCTACAACGTTGATATGTGGGTGATTATTTGAAGGCGATTATAGGGGTGGTTAATCGAAGACGATTATATGGGTAATTCAGTAACACGATGGTTAATCGAAGACGATTATATGGGTAATTCAGTAATACGAATATTAAAGAACGCTTAATTAGGCTTCCAGATTATAGTAGTCATCAAAAGTAGGACACGCATCCTTCAACCAAATTTTTTATTTTTATTTGTCAATAATTAAGTTTCTAGCCTAAATGTACGAGTTTTGTGATACAATCTGCACCTAATCTTAGAGCACCTAAAGTTGCTGACTTCATTTCGTGCGTAAGAGAGCTCAAATATATAAAAGAGGGAAAGCTGAAAAGGGCCGGCTCGGGAGGACTTTATCAAATGGTTAGCTCCCAACATGATTTCTGTATCGAAAGGAAAAGGGAGAATGGGGAGAGGCAGAGCTCCATGCTGTGAGAAAGTGGGACTGAAGAGAGGAACTTGGACGGCTGAGGAAGACGCCAGACTTGTTTCCCACATCCAAAAGCATGGCCACACGAACTGGCGAGCTCTTCCCAAGCAAGCAGGGTTGCTGAGATGTGGGAAGAGCTGTCGCCTCCGTTGGTTCAACTACCTCCGTCCTGATATTAAGCGGGGTGATTTTAGTCCTGAGGAGGAGGAGACCCTCATCAGCCTCCACCGATTGCTCGGAAACAGTTGGTCTAAGATTGCTGCGCACCTGCCGGGAAGAACAGACAACGGGATCAAGAATGTGTGGAATACTCACATCAAGAAGAGACTGCAAGCGAAAGAAAACCCATCGCCGTGCTCTTCTTCCATCTCCGTCGAGTCCAAATGCGATCAAGATGATCATGCCGATATCGACGTATGGGACGTTCTCAACGCAGAAAGCCAACCCCAAATCGTCGCACTGTCTGATACTGATGCGAAACACGATGCTGATGGCATCCTGAGCGAAGAGGTCAGTGAAAAAGGCCGGTGGCTGTCGTACTTGGAGGAGGAATTGGGGATTCTGGAGGAAGAGTTAGGGCTCTTCAATGCTGCCGGCATCGAGGAAGACTGCGGAAATGGCTGTGGTGGGTGAGAGGGATTGGTGAGGTGTTATTTTCATATTGTGAAAGTTGTTGACCGTAGATAAGAGTCATGCTCCGTTTGGTGAATGCATTGAATTATTAAAATACCTAACAACATTTGCTTACAAAATATTTGTTTATTTAATCAATTTTGAAGTCTTTGTTTGTTGGGATGGAAAAACAAGATATAATGCACATTACTAG

Network for GWHGAAEX006643

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00249.30	Myb_DNA-binding	26	73	9.70E-16
PF00249.30	Myb_DNA-binding	79	123	1.30E-14

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	MYB

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	Molecular Function	DNA binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	1.730
SRP064423	SRR2545915	Juvenile tuber	3.710
SRP108465	SRR5643513	five period of Gastrodia elata	0.440
	SRR5643514	five period of Gastrodia elata	1.330
	SRR5643515	five period of Gastrodia elata	1.730
	SRR5643524	five period of Gastrodia elata	1.510
	SRR5643525	five period of Gastrodia elata	3.720
	SRR5643528	five period of Gastrodia elata	3.180
	SRR5643658	five period of Gastrodia elata	4.700
	SRR5643659	five period of Gastrodia elata	1.130
	SRR5643660	five period of Gastrodia elata	0.720
	SRR5643661	five period of Gastrodia elata	1.320
	SRR5643662	five period of Gastrodia elata	1.400
	SRR5643663	five period of Gastrodia elata	1.760
	SRR5643664	five period of Gastrodia elata	0.770
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	4.880
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	3.520
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	7.760
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	5.250
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	8.160
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	10.140
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	9.290
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	10.130
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	13.750
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	14.810
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	3.140
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	3.140
SRP279888	Gastro	Gastrodia elata tuber	9.13
	Juven	Juvenile tuber	0.16
	Mother_Gastro	Mother tuber of Gastrodia elata	37.57
	Mother_Juven	Mother tuber of Juvenile	5.39