Gene detail

Detail information of GWHGAAEX006644/evm.TU.scaffold_188.8

Functional Annotation

Database	Orthologs	Annotation
COG	gi\|108763323\|ref\|YP_630628.1\|	elongation factor G [Myxococcus xanthus DK 1622]
KOG	KOG0465	Mitochondrial elongation factor
nr	gi\|743771421\|ref\|XP_010915999.1\|	PREDICTED: elongation factor G, mitochondrial isoform X1 [Elaeis guineensis]
Swissprot	tr\|Q9FE64\|EFGM_ORYSJ	Elongation factor G, mitochondrial {ECO:0000255\|HAMAP-Rule:MF_03061} (Precursor)
trEMBL	tr\|A5C6E5\|A5C6E5_VITVI	Elongation factor G, mitochondrial {ECO:0000256\|HAMAP-Rule:MF_03061}
TAIR	AT1G45332	Translation elongation factor EFG/EF2 protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000191	185570	216556	-

Transcript Sequence
>GWHTAAEX006644 ATTTTGTGTTACTATCCCTAGAGCGAAACAGCTTCTAAACCCCACAAAAAACTGTTTTTGCAATAATTAGGGTTTTGGGATCAGGCTATCGAAAATTTTCGTCTCGATGGCCAAATCTAGCCTTTCCGGCATCTTCTCCTCACTTCGTCGCACGGCGAATCGGAGTAACGATGCCCCCTTTTATGCCATCGGTCTTTTCTTTATCGATGAAGCAGCCACCGAAGGCCGACGGGCGTTCTCAACTGCGAGCCTTGCTCGCGCGAAGGAAGACAAGGATGCTTGGTGGAAGGAGACGTTGGATAAGGTGAGGAACATCGGAATTTCGGCTCACATCGACTCCGGGAAGACGACGCTTACAGAGAGGATTCTTTTCTACACTGGTCGGATCCATGAGATCCACGAGGTCAGAGGCCGGGATGGAGTTGGTGCCAAGATGGACTCCATGGACCTTGAGCGGGAGAAGGGAATCACCATCCAGTCCGCTGCTACTTACTGCACCTGGAAGGATTACCAAGTTAATATAATTGACACCCCGGGCCATGTTGACTTTACTATTGAAGTTGAGAGAGCTCTTCGCGTGCTTGATGGTGCTATACTCGTCCTATGCAGCGTTGGTGGTGTGCAGAGCCAGTCTATAACAGTTGATCGCCAGATGAGGAGATATAACGTTCCAAGGGTTGCTTTTATTAATAAGCTAGATCGTATGGGAGCAGATCCGTGGAAAGTTCTCAGTCAGGCAAGATCCAAGCTCCGACACCATTCTGCAGCAGTTCAAGTCCCAATTGGATTGGAAGAGGACTTTGAGGGCCTTGTGGATCTTGTTGAACTAAAAGCTTATTATTTTCATGGATCCAATGGTGAGAATGTTGTTACATCTGGTATCCCGTCAAATCTTGAGGCATTGGTATCAGAAAAGCGACACGAACTTATAGAAGTTGTTTCTGAAGTGGATGACCAGCTTGCTGATTCTTTTATTAACGATGAGCCAATATCATCAGATGACCTCAAGATGGCTATACGCAGGGCTACAGTGTCGCAAAAATTTGTGCCAGTTTTTATGGGAAGTGCTTTTAAGAACAAGGGTGTACAACCTCTTCTTGATGGTGTACTTAACTTCTTACCGTCTCCCACTGAAGTTGAAAACCATGCCCTGGATCAGGAAAAGTCTGAAGAGAAGGTTCTGTTATCTGGAAGTCCGGCAGGACCTCTTGTTGCACTGGCATTCAAATTAGAAGAGGGACGCTTTGGCCAATTGACCTATTTAAGAATATATGAAGGCATTATAAGAAAAGGTGATTTCATCATCAACATAAATACAGGGAAAAAGATCAAGGTTCCTCGTTTAGTTCGCTTGCATTCTAATGAAATGGAGGACATTCAAGAAGCTCATGCTGGGCAGATTGTGGCAGTCTTTGGTATTGATTGTGCTTCAGGGGACACATTCACGGATGGGTCTGTGAGGTACACTATGACATCTATGAACGTTCCTGAGCCAGTTATGTCTTTGGCTGTTTCACCTATTTCTAAAGATTCTGGAGCACAGTTTTCTAAAGCTCTAAATAGATTTCAGAAAGAGGACCCAACTTTTCGTGCTGGTCTGGATCCAGAAAGTGGGCAGACTATCATTTCAGGCATGGGGGAGTTGCACTTGGATATTTATGTTGAACGCATTCGAAGGGAGTATAAGGTTGATGCACAAACTGGAAGGCCACGTGTAAATTTTAGGGAGACAATAACACAGCGGGCTGATTTTGATTACATCCATAAGAAACAAACAGGAGGTCAAGGTCAATACGGACGTGTTTGTGGATATATTGAACCCCTTCCAGAGGGAACAGAAACAAAATTTGAATTTGAAAACATGATCATTGGGCAAGCAATCCCATCAAACTATATTTCTTCCATTGAAAAAGGTTTCAAGGAGGCTTGCAACTCGGGTTCATTGATAGGGCATCCCATTGAGAATATTCGTATTGTATTGACAGACGGTGCTTCACATGCTGTTGATTCTAGTGAACTTGCATTCAAGTTGGCATCTATCTATGCTTTGAGACAGTGTTATGCTGCAGCAAGGCCTGTCATACTGGAACCTATTATGAAGGTGGAAATGAAATTTCCCACAGAGTTCCAGGGCACCGTTACTGGTGATGTTAACAAGAGAAAAGGACTAATTATTGGAAATGATCAGGAGGTTGATGGTACAATAGTCGTTGCCCATGTACCACTAAATAATATGTTTGGGTACTCAACCGCTCTGCGCTCAATGACACAGGGCAAAGGAGAATTCACCATGGAGTACCTGAACCACTCTCACGTCTCCCAAGACGTGCAGCTGCAGCTTGTCAACACCTACAAGGCCGGCAAGGGAGCAACGGATTAAAAGCCCAACCTAAGAGTACTAAATACATATAGAGATCGGTTGCCTGTGTTTGCTGCCGCAGCTTCATTTTATTGTATTGGCAATTTGATGTGGGATTTAAACGGGATGTCTGCGATTATTTAATAATCAGTTTTGTGATGAATTGGAATATTAATTTTGATTGGTTGGCAATAATTTTGATTGGTTAACTTGTTTATCTATAACTATTATGTGCCTCCTGAATTTCAGAGGCTAGTTATGTAATGGCCTGCTTTGTTTCAAGCTGTTTCTTGTTTTTTTTTTTTGGCCAAATAATTAAACTAAGTAATTGGGTTTATGACTCGCTCGCTATTAGCATCTGCTTAGTTAATTTTGTTTCAGCTTATTAAATTTGAATCAAACATCGCTAGATTAATTTTTATTTGTAAATGAATCAAGCAGTTTAATCTCAG

Network for GWHGAAEX006644

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00009.26	GTP_EFTU	66	340	9.90E-62
PF03144.24	GTP_EFTU_D2	381	447	3.90E-13
PF14492.5	EFG_II	460	533	1.90E-30
PF03764.17	EFG_IV	535	655	1.10E-37
PF00679.23	EFG_C	658	742	3.40E-24

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006414	Biological Process	translational elongation
GO:0003924	Molecular Function	GTPase activity
GO:0003746	Molecular Function	translation elongation factor activity
GO:0005525	Molecular Function	GTP binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	82.790
SRP064423	SRR2545915	Juvenile tuber	80.490
SRP108465	SRR5643513	five period of Gastrodia elata	40.540
	SRR5643514	five period of Gastrodia elata	35.020
	SRR5643515	five period of Gastrodia elata	35.270
	SRR5643524	five period of Gastrodia elata	33.300
	SRR5643525	five period of Gastrodia elata	21.160
	SRR5643528	five period of Gastrodia elata	19.490
	SRR5643658	five period of Gastrodia elata	14.890
	SRR5643659	five period of Gastrodia elata	53.170
	SRR5643660	five period of Gastrodia elata	52.920
	SRR5643661	five period of Gastrodia elata	51.090
	SRR5643662	five period of Gastrodia elata	47.830
	SRR5643663	five period of Gastrodia elata	50.770
	SRR5643664	five period of Gastrodia elata	53.440
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	56.660
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	55.560
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	53.030
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	55.470
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	54.740
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	54.500
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	53.970
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	51.300
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	51.420
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	50.830
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	48.890
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	48.890
SRP279888	Gastro	Gastrodia elata tuber	74.48
	Juven	Juvenile tuber	59.02
	Mother_Gastro	Mother tuber of Gastrodia elata	21.18
	Mother_Juven	Mother tuber of Juvenile	40.25